Genotype specific and microbiome effects of hypoxia in the model organism Daphnia magna

The effect of hypoxia on Daphnia magna performance and its associated microbial and bacterioplankton community: A scope for phenotypic plasticity and microbiome community interactions upon environmental stress?

(2023) Manon Coone et al.   Frontiers in Ecology and Evolution

Metabolic Phenotype of Daphnia Under Hypoxia: Macroevolution, Microevolution, and Phenotypic Plasticity

(2022) Tingyat M. Lee et al.   Frontiers in Ecology and Evolution

Daphnia as a versatile model system in ecology and evolution

(2022) Dieter Ebert   EvoDevo

Microbiome Heritability and Its Role in Adaptation of Hosts to Novel Resources

(2022) Karen Bisschop et al.   Frontiers in Microbiology

Quantitative microbial population study reveals geographical differences in bacterial symbionts of Ixodes ricinus

(2022) Aleksandra I. Krawczyk et al.   Microbiome

Insights into the composition of gut microbiota in response to environmental temperature: The case of the Mongolia racerunner (Eremias argus)

(2022) Zhirong Zhang et al.   Global Ecology and Conservation

Locally adapted gut microbiomes mediate host stress tolerance

(2021) Shira Houwenhuyse et al.   ISME Journal

Climate and Human-Driven Variability of Summer Hypoxia on a Large River-Dominated Shelf as Revealed by a Hypoxia Index

(2021) Kui Wang et al.   Frontiers in Marine Science

Environmental Influences on the Human Microbiome and Implications for Noncommunicable Disease

(2021) Jiyoung Ahn et al.   Annual Review of Public Health

Hypoxia: The “Invisible Pusher” of Gut Microbiota

(2021) Ni Han et al.   Frontiers in Microbiology

Understanding host-microbiome-environment interactions: Insights from Daphnia as a model organism

(2021) Siddiq Akbar et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities

(2020) Emilie Macke et al.   Frontiers in Microbiology

Effects of normoxic and hypoxic conditions on the immune response and gut microbiota of Bostrichthys sinensis

(2020) Shiliang Fan et al.   AQUACULTURE

Adapting with Microbial Help: Microbiome Flexibility Facilitates Rapid Responses to Environmental Change

(2020) Christian R. Voolstra et al.   BIOESSAYS

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community

(2020) Martijn Callens et al.   FEMS MICROBIOLOGY ECOLOGY

Microbiome definition re-visited: old concepts and new challenges

(2020) Gabriele Berg et al.   Microbiome

Altered intestinal microbiota induced by chronic hypoxia drives the effects on lipid metabolism and the immune response of oriental river prawn Macrobrachium nipponense

(2020) Shengming Sun et al.   AQUACULTURE

Ordered quantile normalization: a semiparametric transformation built for the cross-validation era

(2019) Ryan A. Peterson et al.   JOURNAL OF APPLIED STATISTICS

Neutrality in the Metaorganism

(2019) Michael Sieber et al.   PLOS BIOLOGY

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas

(2019) Huan Li et al.   Microbial Biotechnology

Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature

(2019) Jonas Frankel-Bricker et al.   MICROBIAL ECOLOGY

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks

(2019) Attayeb Mohsen et al.   BMC BIOINFORMATICS

The Mercury-Tolerant Microbiota of the Zooplankton Daphnia Aids in Host Survival and Maintains Fecundity under Mercury Stress

(2019) Jiunn C. Fong et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Changes in the life history traits of Daphnia magna are associated with the gut microbiota composition shaped by diet and antibiotics

(2019) Siddiq Akbar et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diet simplification selects for high gut microbial diversity and strong fermenting ability in high-altitude pikas

(2018) Huan Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen

(2018) Marilou P. Sison-Mangus et al.   Scientific Reports

Precise Fecal Microbiome of the Herbivorous Tibetan Antelope Inhabiting High-Altitude Alpine Plateau

(2018) Xiangning Bai et al.   Frontiers in Microbiology

Life history and eco-evolutionary dynamics in light of the gut microbiota

(2017) Emilie Macke et al.   OIKOS

Validation of a two-generational reproduction test in Daphnia magna : An interlaboratory exercise

(2017) Carlos Barata et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Host-genotype dependent gut microbiota drives zooplankton tolerance to toxic cyanobacteria

(2017) Emilie Macke et al.   Nature Communications

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Pika Gut May Select for Rare but Diverse Environmental Bacteria

(2016) Huan Li et al.   Frontiers in Microbiology

Food availability affects the strength of mutualistic host–microbiota interactions in Daphnia magna

(2015) Martijn Callens et al.   ISME Journal

Symbiotic bacteria contribute to increasing the population size of a freshwater crustacean,Daphnia magna

(2015) Saranya Peerakietkhajorn et al.   Environmental Microbiology Reports

Water fleas require microbiota for survival, growth and reproduction

(2014) Marilou P Sison-Mangus et al.   ISME Journal

Alteration of Predominant Gastrointestinal Flora and Oxidative Damage of Large Intestine Under Simulated Hypobaric Hypoxia

(2014) A. Adak et al.   ZEITSCHRIFT FUR GASTROENTEROLOGIE

Microbial impacts on insect evolutionary diversification: from patterns to mechanisms

(2014) Fabrice Vavre et al.   Current Opinion in Insect Science

Combined effects of hypoxia and ammonia to Daphnia similis estimated with life-history traits

(2013) Kai Lyu et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Dynamics of predominant microbiota in the human gastrointestinal tract and change in luminal enzymes and immunoglobulin profile during high-altitude adaptation

(2013) Atanu Adak et al.   FOLIA MICROBIOLOGICA

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Indirect consequences of hypolimnetic hypoxia on zooplankton growth in a large eutrophic lake

(2012) D Goto et al.   Aquatic Biology

Defining the human microbiome

(2012) Luke K Ursell et al.   NUTRITION REVIEWS

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

ggplot2: Elegant Graphics for Data Analysis by WICKHAM, H.

(2011) Leland Wilkinson   BIOMETRICS

Adaptive haemoglobin gene control in Daphnia pulex at different oxygen and temperature conditions

(2011) Peter Gerke et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Composition and Stability of the Microbial Community inside the Digestive Tract of the Aquatic Crustacean Daphnia magna

(2011) Heike M. Freese et al.   MICROBIAL ECOLOGY

Controlling harmful cyanobacterial blooms in a world experiencing anthropogenic and climatic-induced change

(2011) Hans W. Paerl et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Host–parasite coevolution: Insights from the Daphnia–parasite model system

(2008) Dieter Ebert   CURRENT OPINION IN MICROBIOLOGY

The complete genome of an individual by massively parallel DNA sequencing

(2008) David A. Wheeler et al.   NATURE

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Spreading Dead Zones and Consequences for Marine Ecosystems

(2008) R. J. Diaz et al.   SCIENCE