Synthetic lethal mutants in Escherichia coli define pathways necessary for survival with RNase H deficiency

Robust linear DNA degradation supports replication–initiation-defective mutants in Escherichia coli

(2022) T V Pritha Rao et al.   G3-Genes Genomes Genetics

TusA Is a Versatile Protein That Links Translation Efficiency to Cell Division in Escherichia coli

(2021) Tugba Yildiz et al.   JOURNAL OF BACTERIOLOGY

Ultraviolet-induced RNA:DNA hybrids interfere with chromosomal DNA synthesis

(2021) Elena A Kouzminova et al.   NUCLEIC ACIDS RESEARCH

Organization of the Escherichia coli Chromosome by a MukBEF Axial Core

(2020) Jarno Mäkelä et al.   MOLECULAR CELL

tRNA methylation: An unexpected link to bacterial resistance and persistence to antibiotics and beyond

(2020) Ya‐Ming Hou et al.   Wiley Interdisciplinary Reviews-RNA

Near-continuously synthesized leading strands in Escherichia coli are broken by ribonucleotide excision

(2019) Glen E. Cronan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel mutation in the RNASEH1 gene in a chronic progressive external ophthalmoplegia patient

(2018) Anshu Sachdev et al.   CANADIAN JOURNAL OF OPHTHALMOLOGY-JOURNAL CANADIEN D OPHTALMOLOGIE

A wobbly road to drug resistance in melanoma: tRNA‐modifying enzymes in translation reprogramming

(2018) Mary McMahon et al.   EMBO JOURNAL

When DNA Topology Turns Deadly – RNA Polymerases Dig in Their R-Loops to Stand Their Ground: New Positive and Negative (Super)Twists in the Replication–Transcription Conflict

(2018) Andrei Kuzminov   TRENDS IN GENETICS

RNase HII Saves rnhA Mutant Escherichia coli from R-Loop-Associated Chromosomal Fragmentation

(2017) Elena A. Kouzminova et al.   JOURNAL OF MOLECULAR BIOLOGY

Degradation of RNA during lysis of Escherichia coli cells in agarose plugs breaks the chromosome

(2017) Sharik R. Khan et al.   PLoS One

Processing ribonucleotides incorporated during eukaryotic DNA replication

(2016) Jessica S. Williams et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Assembly of Fe/S proteins in bacterial systems

(2015) B. Blanc et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Elevated Genome-Wide Instability in Yeast Mutants Lacking RNase H Activity

(2015) K. O'Connell et al.   GENETICS

tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae

(2015) Jadyn R. Damon et al.   MOLECULAR BIOLOGY OF THE CELL

Breaking bad: R-loops and genome integrity

(2015) Julie Sollier et al.   TRENDS IN CELL BIOLOGY

MukBEF, a Chromosomal Organizer

(2015) Valentin V. Rybenkov et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Function of Nucleoid-Associated Proteins in Chromosome Structuring and Transcriptional Regulation

(2015) Charles J. Dorman   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Ribonucleotide triggered DNA damage and RNA-DNA damage responses

(2015) Bret D Wallace et al.   RNA Biology

Ribonucleotides in bacterial DNA

(2014) Jeremy W. Schroeder et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Ribonucleotides in DNA: Origins, repair and consequences

(2014) Jessica S. Williams et al.   DNA REPAIR

A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression

(2014) K. Skourti-Stathaki et al.   GENES & DEVELOPMENT

Reduction of hRNase H2 activity in Aicardi–Goutières syndrome cells leads to replication stress and genome instability

(2014) Sara Pizzi et al.   HUMAN MOLECULAR GENETICS

Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli

(2014) Alexandra Vaisman et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Ribose--An Internal Threat to DNA

(2014) K. W. Caldecott   SCIENCE

Genome-Wide Profiling of Yeast DNA:RNA Hybrid Prone Sites with DRIP-Chip

(2014) Yujia A. Chan et al.   PLoS Genetics

Genome-Wide Distribution of RNA-DNA Hybrids Identifies RNase H Targets in tRNA Genes, Retrotransposons and Mitochondria

(2014) Aziz El Hage et al.   PLoS Genetics

Supercoiling in DNA and chromatin

(2013) Nick Gilbert et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Genome-Wide Screening with Hydroxyurea Reveals a Link between Nonessential Ribosomal Proteins and Reactive Oxygen Species Production

(2013) T. Nakayashiki et al.   JOURNAL OF BACTERIOLOGY

The tRNA Thiolation Pathway Modulates the Intracellular Redox State in Escherichia coli

(2013) T. Nakayashiki et al.   JOURNAL OF BACTERIOLOGY

Replication of theEscherichia colichromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics

(2013) Nkabuije Z. Maduike et al.   MOLECULAR MICROBIOLOGY

Cost of rNTP/dNTP pool imbalance at the replication fork

(2013) N. Y. Yao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Solution Structure of the Dickerson DNA Dodecamer Containing a Single Ribonucleotide

(2012) Eugene F. DeRose et al.   BIOCHEMISTRY

Architectural organization in E. coli nucleoid

(2012) Mirjana Macvanin et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Enzymatic Removal of Ribonucleotides from DNA Is Essential for Mammalian Genome Integrity and Development

(2012) Martin A.M. Reijns et al.   CELL

Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity

(2012) Bjoern Hiller et al.   JOURNAL OF EXPERIMENTAL MEDICINE

RNase H2-Initiated Ribonucleotide Excision Repair

(2012) Justin L. Sparks et al.   MOLECULAR CELL

Replication Forks Stalled at Ultraviolet Lesions Are Rescued via RecA and RuvABC Protein-catalyzed Disintegration inEscherichia coli

(2011) Sharik R. Khan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNase H and Multiple RNA Biogenesis Factors Cooperate to Prevent RNA:DNA Hybrids from Generating Genome Instability

(2011) Lamia Wahba et al.   MOLECULAR CELL

DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins

(2010) Renko de Vries   BIOCHIMIE

Genome instability due to ribonucleotide incorporation into DNA

(2010) Stephanie A Nick McElhinny et al.   Nature Chemical Biology

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Interaction of Rep and DnaB on DNA

(2010) John Atkinson et al.   NUCLEIC ACIDS RESEARCH

Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases

(2010) S. A. Nick McElhinny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA topology and topoisomerases

(2009) Joseph E. Deweese et al.   BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

(2009) Hasna Boubakri et al.   EMBO JOURNAL

Ribonuclease H: the enzymes in eukaryotes

(2009) Susana M. Cerritelli et al.   FEBS Journal

Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes

(2009) Takashi Tadokoro et al.   FEBS Journal

Rep Provides a Second Motor at the Replisome to Promote Duplication of Protein-Bound DNA

(2009) Colin P. Guy et al.   MOLECULAR CELL

Junction ribonuclease activity specified in RNases HII/2

(2008) Naoto Ohtani et al.   FEBS Journal

Synthetic Lethality with the dut Defect in Escherichia coli Reveals Layers of DNA Damage of Increasing Complexity Due to Uracil Incorporation

(2008) H. Ting et al.   JOURNAL OF BACTERIOLOGY

Depletion of RNase HI activity inEscherichia colilacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation

(2008) Valentine Usongo et al.   MOLECULAR MICROBIOLOGY