Comparative analysis of Presence-Absence gene Variations in five hard tick species: impact and functional considerations

Cas9-mediated gene editing in the black-legged tick, Ixodes scapularis, by embryo injection and ReMOT Control

(2022) Arvind Sharma et al.   iScience

Differentiated Evolutionary Strategies of Genetic Diversification in Atlantic and Pacific Thaumarchaeal Populations

(2022) Yunha Hwang et al.   mSystems

A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility

(2022) Angelo A. Ruggieri et al.   GENOME RESEARCH

High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation

(2022) Xiaoling Tong et al.   Nature Communications

A chromosome-level assembly of the widely used Rockefeller strain of Aedes aegypti, the yellow fever mosquito

(2022) Cera R Fisher et al.   G3-Genes Genomes Genetics

Mapping ticks and tick-borne pathogens in China

(2021) Guo-Ping Zhao et al.   Nature Communications

Single individual structural variant detection uncovers widespread hemizygosity in molluscs

(2021) Andrew D. Calcino et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Danger on the track? Tick densities near recreation infrastructures in forests

(2021) Mats Van Gestel et al.   URBAN FORESTRY & URBAN GREENING

High Rates of Genome Rearrangements and Pathogenicity of Shigella spp.

(2021) Zaira Seferbekova et al.   Frontiers in Microbiology

Transposable element annotation in non‐model species: The benefits of species‐specific repeat libraries using semi‐automated EDTA and DeepTE de novo pipelines

(2021) Ellen A. Bell et al.   Molecular Ecology Resources

Virome analysis of ticks in a forest region of Liaoning, China: characterization of a novel hepe-like virus sequence

(2021) Zijun Yang et al.   Virology Journal

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center

(2021) Beatrice Amos et al.   NUCLEIC ACIDS RESEARCH

Presence–absence polymorphisms of single-copy genes in the stony coral Acropora digitifera

(2020) Shiho Takahashi-Kariyazono et al.   BMC GENOMICS

Pangenome Graphs

(2020) Jordan M. Eizenga et al.   Annual Review of Genomics and Human Genetics

DeepTE: a computational method for de novo classification of transposons with convolutional neural network

(2020) Haidong Yan et al.   BIOINFORMATICS

Barriers to Effective Tick Management and Tick-Bite Prevention in the United States (Acari: Ixodidae)

(2020) Lars Eisen et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Interactions between Borrelia burgdorferi and ticks

(2020) Cheyne Kurokawa et al.   NATURE REVIEWS MICROBIOLOGY

Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities

(2020) Na Jia et al.   CELL

Expansion of Tick-Borne Rickettsioses in the World

(2020) Mariusz Piotrowski et al.   Microorganisms

A dataset of distribution and diversity of ticks in China

(2019) Guanshi Zhang et al.   Scientific Data

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications

(2019) Agnieszka A. Golicz et al.   TRENDS IN GENETICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Heterogeneous rates of genome rearrangement contributed to the disparity of species richness in Ascomycota

(2018) Ahmad Rajeh et al.   BMC GENOMICS

Phenotypic diversification by enhanced genome restructuring after induction of multiple DNA double-strand breaks

(2018) Nobuhiko Muramoto et al.   Nature Communications

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Meeting the challenge of tick-borne disease control: A proposal for 1000 Ixodes genomes

(2018) Maria V. Murgia et al.   Ticks and Tick-Borne Diseases

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs

(2018) Evgenia V Kriventseva et al.   NUCLEIC ACIDS RESEARCH

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Emergence of tick-borne diseases at northern latitudes in Europe: a comparative approach

(2017) Atle Mysterud et al.   Scientific Reports

Education on tick bite and Lyme borreliosis prevention, aimed at schoolchildren in the Netherlands: comparing the effects of an online educational video game versus a leaflet or no intervention

(2016) D. J. M. A. Beaujean et al.   BMC PUBLIC HEALTH

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

(2016) Monika Gulia-Nuss et al.   Nature Communications

Tick Genome Assembled: New Opportunities for Research on Tick-Host-Pathogen Interactions

(2016) José de la Fuente et al.   Frontiers in Cellular and Infection Microbiology

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Trends in genome dynamics among major orders of insects revealed through variations in protein families

(2015) Nadav Rappoport et al.   BMC GENOMICS

Effect of climate change on vector-borne disease risk in the UK

(2015) Jolyon M Medlock et al.   LANCET INFECTIOUS DISEASES

Towards plant pangenomics

(2015) Agnieszka A. Golicz et al.   PLANT BIOTECHNOLOGY JOURNAL

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Ticking All the Boxes? A Systematic Review of Education and Communication Interventions to Prevent Tick-Borne Disease

(2012) Fiona Mowbray et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS