Trends in genome dynamics among major orders of insects revealed through variations in protein families

ProtoBug: functional families from the complete proteomes of insects

(2015) Nadav Rappoport et al.   Database-The Journal of Biological Databases and Curation

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex

(2013) Nadav Rappoport et al.   BMC BIOINFORMATICS

Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes

(2013) Lothar Wissler et al.   Genome Biology and Evolution

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

(2013) D. F. Simola et al.   GENOME RESEARCH

Accelerated Evolution of Innate Immunity Proteins in Social Insects: Adaptive Evolution or Relaxed Constraint?

(2013) Brock A. Harpur et al.   MOLECULAR BIOLOGY AND EVOLUTION

ProtoNet: charting the expanding universe of protein sequences

(2013) Nadav Rappoport et al.   NATURE BIOTECHNOLOGY

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

TimeTree2: species divergence times on the iPhone

(2011) S. Kumar et al.   BIOINFORMATICS

BadiRate: estimating family turnover rates by likelihood-based methods

(2011) P. Librado et al.   BIOINFORMATICS

Models, algorithms and programs for phylogeny reconciliation

(2011) J.-P. Doyon et al.   BRIEFINGS IN BIOINFORMATICS

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming

(2011) Sanne Nygaard et al.   GENOME RESEARCH

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

The genome of the fire ant Solenopsis invicta

(2011) Y. Wurm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Creating a Buzz About Insect Genomes

(2011) G. E. Robinson et al.   SCIENCE

Comparative sequence analysis of poxvirus A32 gene encoded ATPase protein and carboxyl terminal heterogeneity of Indian orf viruses

(2011) Revanaiah Yogisharadhya et al.   VETERINARY MICROBIOLOGY

The distribution of microsatellites in theNasoniaparasitoid wasp genome

(2010) B. A. Pannebakker et al.   INSECT MOLECULAR BIOLOGY

Sociality Is Linked to Rates of Protein Evolution in a Highly Social Insect

(2010) B. G. Hunt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of the Insect Yellow Gene Family

(2010) L. C. Ferguson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

(2010) M. C. Munoz-Torres et al.   NUCLEIC ACIDS RESEARCH

Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics

(2010) P. Arensburger et al.   SCIENCE

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

The cytochrome P450 (CYP) gene superfamily in Daphnia pulex

(2009) William S Baldwin et al.   BMC GENOMICS

Rapid Evolution of Immune Proteins in Social Insects

(2009) L. Viljakainen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Protein function annotation by homology-based inference

(2009) Yaniv Loewenstein et al.   GENOME BIOLOGY

Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space

(2008) Y. Loewenstein et al.   BIOINFORMATICS

The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity

(2008) Masatoshi Nei et al.   NATURE REVIEWS GENETICS

Gene Ontology annotation quality analysis in model eukaryotes

(2008) Teresia J. Buza et al.   NUCLEIC ACIDS RESEARCH

Major evolutionary transitions in ant agriculture

(2008) T. R. Schultz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA