Heterogeneous rates of genome rearrangement contributed to the disparity of species richness in Ascomycota
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Heterogeneous rates of genome rearrangement contributed to the disparity of species richness in Ascomycota
Authors
Keywords
Chromosomal rearrangements, Species richness, Ascomycota, Taphrinomycotina, Pezizomycotina, Saccharomycotina
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-04-24
DOI
10.1186/s12864-018-4683-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly
- (2017) Daniel L. Cameron et al. GENOME RESEARCH
- Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
- (2016) Brigida Gallone et al. CELL
- Genomics and the making of yeast biodiversity
- (2015) Chris Todd Hittinger et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- ASTRAL: genome-scale coalescent-based species tree estimation
- (2014) S. Mirarab et al. BIOINFORMATICS
- InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic
- (2014) Erik L.L. Sonnhammer et al. NUCLEIC ACIDS RESEARCH
- Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast
- (2014) Sarah E Zanders et al. eLife
- Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms
- (2013) A. Malhotra et al. GENOME RESEARCH
- Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
- (2013) R. de Jonge et al. GENOME RESEARCH
- Dating the Diversification of the Major Lineages of Ascomycota (Fungi)
- (2013) María Prieto et al. PLoS One
- Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis , Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence
- (2013) Viola A. Manning et al. G3-Genes Genomes Genetics
- YAHA: fast and flexible long-read alignment with optimal breakpoint detection
- (2012) G. G. Faust et al. BIOINFORMATICS
- Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly
- (2012) H. Li BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Genome evolution in filamentous plant pathogens: why bigger can be better
- (2012) Sylvain Raffaele et al. NATURE REVIEWS MICROBIOLOGY
- Clade Age and Species Richness Are Decoupled Across the Eukaryotic Tree of Life
- (2012) Daniel L. Rabosky et al. PLOS BIOLOGY
- Transposable elements in yeasts
- (2011) Claudine Bleykasten-Grosshans et al. COMPTES RENDUS BIOLOGIES
- Yeasty clocks: Dating genomic changes in yeasts
- (2011) Thomas Rolland et al. COMPTES RENDUS BIOLOGIES
- LTR Retrotransposons in Fungi
- (2011) Anna Muszewska et al. PLoS One
- Comparative Functional Genomics of the Fission Yeasts
- (2011) N. Rhind et al. SCIENCE
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Genome Rearrangements of Completely Sequenced Strains of Yersinia pestis
- (2010) Y. Liang et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Yeast evolutionary genomics
- (2010) Bernard Dujon NATURE REVIEWS GENETICS
- Chromosomal speciation revisited: rearranging theory with pieces of evidence
- (2010) Rui Faria et al. TRENDS IN ECOLOGY & EVOLUTION
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions
- (2009) Daniel L. Rabosky ECOLOGY LETTERS
- Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
- (2009) F. Hormozdiari et al. GENOME RESEARCH
- Evolution of pathogenicity and sexual reproduction in eight Candida genomes
- (2009) Geraldine Butler et al. NATURE
- Computational methods for discovering structural variation with next-generation sequencing
- (2009) Paul Medvedev et al. NATURE METHODS
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits
- (2009) Conrad L. Schoch et al. SYSTEMATIC BIOLOGY
- Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome
- (2009) Jonathan L. Gordon et al. PLoS Genetics
- PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
- (2009) Jan O Korbel et al. GENOME BIOLOGY
- Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle
- (2008) I. J. Tsai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A genome-wide view of the spectrum of spontaneous mutations in yeast
- (2008) M. Lynch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now