Unraveling the microbiotas and key genetic contexts identified on stone heritage using illumina and nanopore sequencing platforms

Unraveling disparate roles of organisms, from plants to bacteria, and viruses on built cultural heritage

(2023) Patricia Sanmartín et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biodeterioration of stone monuments: Studies on the influence of bioreceptivity on cyanobacterial biofilm growth and on the biocidal efficacy of essential oils in natural hydrogel

(2023) Francesco Gabriele et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Exploring taxonomic and functional microbiome of Hawaiian stream and spring irrigation water systems using Illumina and Oxford Nanopore sequencing platforms

(2023) Diksha Klair et al.   Frontiers in Microbiology

Evaluating the durability and performance of polyoxometalate-ionic liquid coatings on calcareous stones: Preventing biocolonisation in outdoor environments

(2023) Stéphanie Eyssautier-Chuine et al.   Science of The Total Environment

Ecological Role of Bacteria Involved in the Biogeochemical Cycles of Mangroves Based on Functional Genes Detected through GeoChip 5.0

(2022) Shanshan Meng et al.   mSphere

Long-amplicon MinION-based sequencing study in a salt-contaminated twelfth century granite-built chapel

(2022) Jelena Pavlović et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biodeterioration of stone and metal — Fundamental microbial cycling processes with spatial and temporal scale differences

(2022) Christine Gaylarde et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Short- and long-read metagenomics insight into the genetic contexts and hosts of mobile antibiotic resistome in Chinese swine farms

(2022) Lili Li et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A metagenomic analysis of the bacterial microbiome of limestone, and the role of associated biofilms in the biodeterioration of heritage stone surfaces

(2022) Philip J. A. Skipper et al.   Scientific Reports

Impact of benzalkonium chloride, benzethonium chloride and chloroxylenol on bacterial antimicrobial resistance

(2022) Jean‐Yves Maillard   JOURNAL OF APPLIED MICROBIOLOGY

Epidemiology and antibiotic resistance of prosthetic joint infections according to time of occurrence, a 10-year study

(2022) Alice Casenaz et al.   JOURNAL OF INFECTION

Short- and long-read metagenomics expand individualized structural variations in gut microbiomes

(2022) Liang Chen et al.   Nature Communications

The microbiome of candle beeswax drops on ancient manuscripts

(2022) Jelena Pavlović et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Biofilms on stone monuments: biodeterioration or bioprotection?

(2022) Xiaobo Liu et al.   TRENDS IN MICROBIOLOGY

Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body

(2022) Ziqi Wu et al.   WATER RESEARCH

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

(2021) Yoshiyuki Matsuo et al.   BMC MICROBIOLOGY

Perspectives for antimicrobial nanomaterials in cultural heritage conservation

(2021) Isabel Franco-Castillo et al.   Chem

Nanopore sequencing and its application to the study of microbial communities

(2021) Laura Ciuffreda et al.   Computational and Structural Biotechnology Journal

Microscopic and biomolecular complementary approaches to characterize bioweathering processes at petroglyph sites from the Negev Desert, Israel

(2021) Irit Nir et al.   ENVIRONMENTAL MICROBIOLOGY

MinION technology for microbiome sequencing applications for the conservation of cultural heritage

(2021) Jelena Pavlovic et al.   MICROBIOLOGICAL RESEARCH

Co-occurrence of antimicrobial and metal resistance genes in pig feces and agricultural fields fertilized with slurry

(2021) Shifu Peng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Towards understanding the link between the deterioration of building materials and the nature of aerophytic green algae

(2021) Paulina Nowicka-Krawczyk et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Trends in antimicrobial resistance in bloodstream infections at a large tertiary-care hospital in China: a 10-year retrospective study (2010–2019)

(2021) Cailin Liu et al.   Journal of Global Antimicrobial Resistance

Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy

(2021) Lei Liu et al.   Microbiome

Benzalkonium chloride antagonises aminoglycoside antibiotics and promotes evolution of resistance

(2021) Francesca L Short et al.   EBioMedicine

Rapid diagnosis of biological colonization in cultural artefacts using the MinION nanopore sequencing technology

(2020) Guadalupe Piñar et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Nanopore Sequencing and Bioinformatics for Rapidly Identifying Cultural Heritage Spoilage Microorganisms

(2020) Alessandro Grottoli et al.   Frontiers in Materials

Microbial diversity and composition of the Preah Vihear temple in Cambodia by high-throughput sequencing based on genomic DNA and RNA

(2020) Han Meng et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Antimicrobial release from cleaning poultices for the conservation and disinfection of stone surfaces

(2020) Chiara Gallo et al.   APPLIED CLAY SCIENCE

Microbiome and nitrate removal processes by microorganisms on the ancient Preah Vihear temple of Cambodia revealed by metagenomics and N-15 isotope analyses

(2020) Xinghua Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Investigation on Microbial Biodeterioration of the Stone Monuments in Yildiz Technical University—Yildiz Campus—Istanbul—Turkey

(2020) Aysun Özdemir et al.   CURRENT MICROBIOLOGY

Differential colonization of microbial communities inhabiting Lede stone in the urban and rural environment

(2020) Laurenz Schröer et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial deterioration and sustainable conservation of stone monuments and buildings

(2020) Xiaobo Liu et al.   Nature Sustainability

SCycDB: A curated functional gene database for metagenomic profiling of sulphur cycling pathways

(2020) Xiaoli Yu et al.   Molecular Ecology Resources

The Microbiome of Leonardo da Vinci’s Drawings: A Bio-Archive of Their History

(2020) Guadalupe Piñar et al.   Frontiers in Microbiology

Interaction of cyanobacteria with calcium facilitates the sedimentation of microplastics in a eutrophic reservoir

(2020) Rico Leiser et al.   WATER RESEARCH

Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing

(2019) You Che et al.   Microbiome

Drug combinations: a strategy to extend the life of antibiotics in the 21st century

(2019) Mike Tyers et al.   NATURE REVIEWS MICROBIOLOGY

Elucidating the ecological networks in stone‐dwelling microbiomes

(2019) Moussa Louati et al.   ENVIRONMENTAL MICROBIOLOGY

Biochemical reactions and mechanisms involved in the biodeterioration of stone world cultural heritage under the tropical climate conditions

(2019) Guoxia Zhang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Deterioration and microbial colonization of cultural heritage stone buildings in polluted and unpolluted tropical and subtropical climates: A meta-analysis

(2019) Otto Ortega-Morales et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Lithoautotrophical oxidation of elemental sulfur by fungi including Fusarium solani isolated from sandstone Angkor temples

(2018) Hai-Bo Xu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Water is a critical factor in evaluating and assessing microbial colonization and destruction of Angkor sandstone monuments

(2018) Xiaobo Liu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds

(2018) Tobias Koch et al.   ISME Journal

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes

(2018) Qichao Tu et al.   BIOINFORMATICS

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

(2017) Matthew R Olm et al.   ISME Journal

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

(2017) K. Dimitri Kits et al.   NATURE

The nitrogen cycle

(2016) Lisa Y. Stein et al.   CURRENT BIOLOGY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Alkali Metals in Addition to Acidic pH Activate the EvgS Histidine Kinase Sensor in Escherichia coli

(2014) Y. Eguchi et al.   JOURNAL OF BACTERIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

The role of aquatic ecosystems as reservoirs of antibiotic resistance

(2013) Elisabet Marti et al.   TRENDS IN MICROBIOLOGY

Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism

(2012) Fabian Grein et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Microbially induced deterioration of architectural heritages: routes and mechanisms involved

(2012) Tikam Dakal et al.   Environmental Sciences Europe

Mycobacteria Isolated from Angkor Monument Sandstones Grow Chemolithoautotrophically by Oxidizing Elemental Sulfur

(2011) Asako Kusumi et al.   Frontiers in Microbiology

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Fungi: Their role in deterioration of cultural heritage

(2010) Katja Sterflinger   Fungal Biology Reviews

Impact of biocide treatments on the bacterial communities of the Lascaux Cave

(2009) Fabiola Bastian et al.   NATURWISSENSCHAFTEN

Bioinformatic and Expression Analyses of Genes Mediating Zinc Homeostasis in Nostoc punctiforme

(2008) L. Hudek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

(2008) James I. Prosser et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation and characterization of the heavy metal resistant bacteria CCNWRS33-2 isolated from root nodule of Lespedeza cuneata in gold mine tailings in China

(2008) Gehong Wei et al.   JOURNAL OF HAZARDOUS MATERIALS