Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
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Title
Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
Authors
Keywords
Nanopore sequencing, Mobile antibiotic resistome, Host-tracking, Genetic context, Conjugative plasmids
Journal
Microbiome
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2019-03-21
DOI
10.1186/s40168-019-0663-0
References
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Related references
Note: Only part of the references are listed.- ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
- (2018) Xiaole Yin et al. BIOINFORMATICS
- NanoPack: visualizing and processing long-read sequencing data
- (2018) Wouter De Coster et al. BIOINFORMATICS
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- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
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- PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
- (2018) Pawel S Krawczyk et al. NUCLEIC ACIDS RESEARCH
- Antibiotic-Resistance Genes in Waste Water
- (2018) Antti Karkman et al. TRENDS IN MICROBIOLOGY
- Characterization of Acinetobacter baumannii from water and sludge line of secondary wastewater treatment plant
- (2018) Paul G. Higgins et al. WATER RESEARCH
- Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes
- (2018) Wenguang Xiong et al. Microbiome
- Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices
- (2018) Nicholas D Sanderson et al. BMC GENOMICS
- High-Resolution Temporal and Spatial Patterns of Virome in Wastewater Treatment Systems
- (2018) Yulin Wang et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Antibiotic Resistance Genes and Correlations with Microbial Community and Metal Resistance Genes in Full-Scale Biogas Reactors As Revealed by Metagenomic Analysis
- (2017) Gang Luo et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Identification of new bacteria harboring qnrS and aac(6′)-Ib/cr and mutations possibly involved in fluoroquinolone resistance in raw sewage and activated sludge samples from a full-scale WWTP
- (2017) Magna C. Paiva et al. WATER RESEARCH
- Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements
- (2017) Jianhua Guo et al. WATER RESEARCH
- Dissemination of antibiotic resistance genes from antibiotic producers to pathogens
- (2017) Xinglin Jiang et al. Nature Communications
- MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage
- (2017) Yu Xia et al. Frontiers in Microbiology
- Characterization of Two Multidrug-Resistant IncA/C Plasmids from the 1960s by Using the MinION Sequencer Device
- (2016) Mónika Szabó et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys
- (2016) Chao Xie et al. BMC BIOINFORMATICS
- Centrifuge: rapid and sensitive classification of metagenomic sequences
- (2016) Daehwan Kim et al. GENOME RESEARCH
- Real-time, portable genome sequencing for Ebola surveillance
- (2016) Joshua Quick et al. NATURE
- Proteobacteria become predominant during regrowth after water disinfection
- (2016) Cristina Becerra-Castro et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Genetic redundancy and persistence of plasmid-mediated trimethoprim/sulfamethoxazole resistant effluent and stream water Escherichia coli
- (2016) Suhartono Suhartono et al. WATER RESEARCH
- Co-occurrence of integrase 1, antibiotic and heavy metal resistance genes in municipal wastewater treatment plants
- (2016) Andrea Di Cesare et al. WATER RESEARCH
- Antibiotic resistance genes and human bacterial pathogens: Co-occurrence, removal, and enrichment in municipal sewage sludge digesters
- (2016) Feng Ju et al. WATER RESEARCH
- Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture
- (2016) Timothy A. Johnson et al. mBio
- Integrative and Conjugative Elements (ICEs): What They Do and How They Work
- (2015) Christopher M. Johnson et al. Annual Review of Genetics
- Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.
- (2015) S. Zhao et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces
- (2015) Liping Ma et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
- (2015) Sarah J Spencer et al. ISME Journal
- Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics
- (2015) Rendy Ruvindy et al. ISME Journal
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
- Occurrence of antibiotics and antibiotic resistance genes in hospital and urban wastewaters and their impact on the receiving river
- (2015) Sara Rodriguez-Mozaz et al. WATER RESEARCH
- Tn5253Family Integrative and Conjugative Elements Carryingmef(I) andcatQDeterminants in Streptococcus pneumoniae and Streptococcus pyogenes
- (2014) Marina Mingoia et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
- (2014) Michael R Gillings et al. ISME Journal
- MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
- (2014) Philip M Ashton et al. NATURE BIOTECHNOLOGY
- Plasmids and the spread of resistance
- (2013) Alessandra Carattoli INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Community-wide plasmid gene mobilization and selection
- (2013) Vladimir Sentchilo et al. ISME Journal
- Broad-host-range IncP-1 plasmids and their resistance potential
- (2013) Magdalena Popowska et al. Frontiers in Microbiology
- Characterization of a Streptococcus suis tet(O/W/32/O)-Carrying Element Transferable to Major Streptococcal Pathogens
- (2012) Claudio Palmieri et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- CTX-M-15-producing Escherichia coli clone B2-O25b-ST131 and Klebsiella spp. isolates in municipal wastewater treatment plant effluents
- (2011) Monika Dolejska et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria
- (2011) Dexi Bi et al. NUCLEIC ACIDS RESEARCH
- Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge
- (2011) Tong Zhang et al. PLoS One
- Rapid Pneumococcal Evolution in Response to Clinical Interventions
- (2011) N. J. Croucher et al. SCIENCE
- Inactivation and reactivation of antibiotic-resistant bacteria by chlorination in secondary effluents of a municipal wastewater treatment plant
- (2011) Jing-Jing Huang et al. WATER RESEARCH
- EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
- (2011) Christopher S Miller et al. GENOME BIOLOGY
- Antimicrobial resistance of fecal indicators in municipal wastewater treatment plant
- (2010) A. Łuczkiewicz et al. WATER RESEARCH
- Phenotyping and Genotyping of Antibiotic-Resistant Escherichia coli Isolated from a Natural River Basin
- (2008) Jianying Hu et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
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