Short- and long-read metagenomics insight into the genetic contexts and hosts of mobile antibiotic resistome in Chinese swine farms
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Short- and long-read metagenomics insight into the genetic contexts and hosts of mobile antibiotic resistome in Chinese swine farms
Authors
Keywords
Nanopore sequencing, Illumina sequencing, Resistome, Host-tracking, Genetic context
Journal
SCIENCE OF THE TOTAL ENVIRONMENT
Volume 827, Issue -, Pages 154352
Publisher
Elsevier BV
Online
2022-03-07
DOI
10.1016/j.scitotenv.2022.154352
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Abundance of tigecycline resistance genes and association with antibiotic residues in Chinese livestock farms
- (2021) Yulin Fu et al. JOURNAL OF HAZARDOUS MATERIALS
- Complete, closed bacterial genomes from microbiomes using nanopore sequencing
- (2020) Eli L. Moss et al. NATURE BIOTECHNOLOGY
- Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms
- (2020) Jian Sun et al. Nature Communications
- Linezolid-resistant (Tn6246::fexB-poxtA) Enterococcus faecium strains colonizing humans and bovines on different continents: similarity without epidemiological link
- (2020) Ana R Freitas et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome
- (2020) Dylan G. Maghini et al. Nature Protocols
- High prevalence and persistence of carbapenem and colistin resistance in livestock farm environments in China
- (2020) Xiaomin Shi et al. JOURNAL OF HAZARDOUS MATERIALS
- Distribution patterns of antibiotic resistance genes and their bacterial hosts in pig farm wastewater treatment systems and soil fertilized with pig manure
- (2020) Rong-Min Zhang et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Metagenomic insights into the distribution of antibiotic resistome between the gut-associated environments and the pristine environments
- (2019) Jiaxiong Zeng et al. ENVIRONMENT INTERNATIONAL
- Microbial diversity and antibiotic resistome in swine farm environments
- (2019) Liang-Ying He et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Genetic Characterization of blaCTX–M–55 -Bearing Plasmids Harbored by Food-Borne Cephalosporin-Resistant Vibrio parahaemolyticus Strains in China
- (2019) Zhiwei Zheng et al. Frontiers in Microbiology
- Distribution of quinolone resistance gene (qnr) in ESBL-producing Escherichia coli and Klebsiella spp. in Lomé, Togo
- (2019) Fortune Djimabi Salah et al. Antimicrobial Resistance and Infection Control
- Swine waste: A reservoir of high-risk blaNDM and mcr-1
- (2019) Fengxia Yang et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Characterization of the Pig Gut Microbiome and Antibiotic Resistome in Industrialized Feedlots in China
- (2019) Chunlai Wang et al. mSystems
- Detection of poxtA- and optrA-carrying E. faecium isolates in air samples of a Spanish swine farm
- (2019) Laura Ruiz-Ripa et al. Journal of Global Antimicrobial Resistance
- Review of antibiotic resistance in China and its environment
- (2018) Min Qiao et al. ENVIRONMENT INTERNATIONAL
- Dissemination of antibiotic resistance genes and human pathogenic bacteria from a pig feedlot to the surrounding stream and agricultural soils
- (2018) Hua Fang et al. JOURNAL OF HAZARDOUS MATERIALS
- Feed additives shift gut microbiota and enrich antibiotic resistance in swine gut
- (2018) Yi Zhao et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
- (2018) Patrick Munk et al. Nature Microbiology
- Evolution of Plasmid-Mediated Antibiotic Resistance in the Clinical Context
- (2018) Alvaro San Millan TRENDS IN MICROBIOLOGY
- MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
- (2018) Gherman V. Uritskiy et al. Microbiome
- VFDB 2019: a comparative pathogenomic platform with an interactive web interface
- (2018) Bo Liu et al. NUCLEIC ACIDS RESEARCH
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Fate of antibiotic resistance genes and their associations with bacterial community in livestock breeding wastewater and its receiving river water
- (2017) Shuyu Jia et al. WATER RESEARCH
- World Health Organization Ranking of Antimicrobials According to Their Importance in Human Medicine: A Critical Step for Developing Risk Management Strategies to Control Antimicrobial Resistance From Food Animal Production
- (2016) Peter C. Collignon et al. CLINICAL INFECTIOUS DISEASES
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- The Soil Microbiota Harbors a Diversity of Carbapenem-Hydrolyzing β-Lactamases of Potential Clinical Relevance
- (2015) Dereje Dadi Gudeta et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Diverse and abundant antibiotic resistance genes in Chinese swine farms
- (2013) Yong-Guan Zhu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Ab initio gene identification in metagenomic sequences
- (2010) Wenhan Zhu et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- ACLAME: A CLAssification of Mobile genetic Elements, update 2010
- (2009) Raphaël Leplae et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search