IBD sharing patterns as intra-breed admixture indicators in small ruminants

ChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes

(2022) Lakshay Anand et al.   BMC BIOINFORMATICS

Editorial: Early Domestication and Artificial Selection of Animals

(2022) Hai Xiang et al.   Frontiers in Genetics

Competitiveness of Spanish Local Breeds

(2022) José Perea et al.   Animals

Editorial: Haplotype Analysis Applied to Livestock Genomics

(2021) Gábor Mészáros et al.   Frontiers in Genetics

Search for Selection Signatures Related to Trypanosomosis Tolerance in African Goats

(2021) Bruno Serranito et al.   Frontiers in Genetics

Local adaptations of Mediterranean sheep and goats through an integrative approach

(2021) Bruno Serranito et al.   Scientific Reports

Unraveling Admixture, Inbreeding, and Recent Selection Signatures in West African Indigenous Cattle Populations in Benin

(2021) Sèyi Fridaïus Ulrich Vanvanhossou et al.   Frontiers in Genetics

Dynamics of genomic architecture during composite breed development in cattle

(2020) T. do P. Paim et al.   ANIMAL GENETICS

Performing highly efficient genome scans for local adaptation with R package pcadapt version 4

(2020) Florian Privé et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancestral Haplotype Mapping for GWAS and Detection of Signatures of Selection in Admixed Dairy Cattle of Kenya

(2020) Hassan Aliloo et al.   Frontiers in Genetics

The genomic architecture of South African mutton, pelt, dual‐purpose and nondescript sheep breeds relative to global sheep populations

(2020) E. F. Dzomba et al.   ANIMAL GENETICS

Genome-wide insights of Ethiopian indigenous sheep populations reveal the population structure related to tail morphology and phylogeography

(2020) Agraw Amane et al.   Genes & Genomics

Intensified Use of Reproductive Technologies and Reduced Dimensions of Breeding Schemes Put Genetic Diversity at Risk in Dairy Cattle Breeds

(2020) Anna-Charlotte Doublet et al.   Animals

A global analysis of CNVs in diverse yak populations using whole-genome resequencing

(2019) Hui Wang et al.   BMC GENOMICS

Deciphering the patterns of genetic admixture and diversity in southern European cattle using Genome-wide SNPs

(2019) Maulik Upadhyay et al.   Evolutionary Applications

Genome-Wide Variation, Candidate Regions and Genes Associated With Fat Deposition and Tail Morphology in Ethiopian Indigenous Sheep

(2019) Abulgasim Ahbara et al.   Frontiers in Genetics

Experimental crossbreeding reveals strain-specific variation in mortality, growth and personality in the brown trout (Salmo trutta)

(2019) Anni Ågren et al.   Scientific Reports

Genetic homogenization of indigenous sheep breeds in Northwest Africa

(2019) Ibrahim Belabdi et al.   Scientific Reports

Using Haplotype Information for Conservation Genomics

(2019) Maeva Leitwein et al.   TRENDS IN ECOLOGY & EVOLUTION

Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

(2018) Christina Marie Rochus et al.   BMC GENOMICS

The breakdown of genomic ancestry blocks in hybrid lineages given a finite number of recombination sites

(2018) Thijs Janzen et al.   EVOLUTION

Genetic homogeneity of North-African goats

(2018) Nadjet-Amina Ouchene-Khelifi et al.   PLoS One

Widespread introgression in Chinese indigenous chicken breeds from commercial broiler

(2018) Chunyuan Zhang et al.   Evolutionary Applications

Genomic Reconstruction of the History of Native Sheep Reveals the Peopling Patterns of Nomads and the Expansion of Early Pastoralism in East Asia

(2017) Yong-Xin Zhao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic diversity and population structure of South African smallholder farmer sheep breeds determined using the OvineSNP50 beadchip

(2017) Annelin H. Molotsi et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Genetic Diversity and Population Structure of Ethiopian Sheep Populations Revealed by High-Density SNP Markers

(2017) Zewdu Edea et al.   Frontiers in Genetics

Genomic footprints of dryland stress adaptation in Egyptian fat-tail sheep and their divergence from East African and western Asia cohorts

(2017) Joram M. Mwacharo et al.   Scientific Reports

Runs of homozygosity: current knowledge and applications in livestock

(2016) E. Peripolli et al.   ANIMAL GENETICS

Hybridization and extinction

(2016) Marco Todesco et al.   Evolutionary Applications

Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments

(2016) Ji Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs

(2016) Adam H. Freedman et al.   PLoS Genetics

Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent

(2015) Sharon R. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

netview p: a network visualization tool to unravel complex population structure using genome-wide SNPs

(2015) Eike J. Steinig et al.   Molecular Ecology Resources

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs

(2015) Clare D. Marsden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Revisiting demographic processes in cattle with genome-wide population genetic analysis

(2015) Pablo Orozco-terWengel et al.   Frontiers in Genetics

The Lengths of Admixture Tracts

(2014) M. Liang et al.   GENETICS

Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

(2014) Jared E. Decker et al.   PLoS Genetics

Detecting and Characterizing Genomic Signatures of Positive Selection in Global Populations

(2013) Xuanyao Liu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Adaptation to climate change – exploring the potential of locally adapted breeds

(2013) Irene Hoffmann   Animal

Evaluation of breeding objectives for purebred and crossbred selection schemes for adoption in indigenous chicken breeding programmes

(2013) T.O. Okeno et al.   BRITISH POULTRY SCIENCE

Identity by Descent Between Distant Relatives: Detection and Applications

(2012) Sharon R. Browning et al.   Annual Review of Genetics

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Rates of inbreeding and genetic diversity in Canadian Holstein and Jersey cattle

(2011) K. Stachowicz et al.   JOURNAL OF DAIRY SCIENCE

Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models

(2010) Simon N. Wood   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Estimation of Pairwise Identity by Descent From Dense Genetic Marker Data in a Population Sample of Haplotypes

(2008) S. R. Browning   GENETICS

Linkage Disequilibrium Decay and Haplotype Block Structure in the Pig

(2008) A. J. Amaral et al.   GENETICS

Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts

(2008) J. E. Pool et al.   GENETICS

Are cattle, sheep, and goats endangered species?

(2007) P. TABERLET et al.   MOLECULAR ECOLOGY