Ancestral Haplotype Mapping for GWAS and Detection of Signatures of Selection in Admixed Dairy Cattle of Kenya

Livestock Genomics for Developing Countries – African Examples in Practice

(2019) Karen Marshall et al.   Frontiers in Genetics

Genetic evaluation of test-day milk yields from smallholder dairy production systems in Kenya using genomic relationships

(2019) J.M.K. Ojango et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Genomic selection for small ruminants in developed countries: how applicable for the rest of the world?

(2018) R. Mrode et al.   Animal

Genome-wide association study for milking speed in French Holstein cows

(2018) Andrew Marete et al.   JOURNAL OF DAIRY SCIENCE

Short communication: Uncovering quantitative trait loci associated with resistance to Mycobacterium avium ssp. paratuberculosis infection in Holstein cattle using a high-density single nucleotide polymorphism panel

(2018) Sanjay Mallikarjunappa et al.   JOURNAL OF DAIRY SCIENCE

Signatures of positive selection in African Butana and Kenana dairy zebu cattle

(2018) Hussain Bahbahani et al.   PLoS One

Chondroitin Sulfate Proteoglycan 4 and Its Potential As an Antibody Immunotherapy Target across Different Tumor Types

(2018) Kristina M. Ilieva et al.   Frontiers in Immunology

The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa

(2018) H. Aliloo et al.   JOURNAL OF DAIRY SCIENCE

Signatures of Selection in Admixed Dairy Cattle in Tanzania

(2018) Evans Kiptoo Cheruiyot et al.   Frontiers in Genetics

Genome-wide mapping of 10 calving and fertility traits in Holstein dairy cattle with special regard to chromosome 18

(2017) M.-P. Müller et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

(2016) T. Iso-Touru et al.   BMC GENETICS

Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

(2016) Shadi Nayeri et al.   BMC GENETICS

Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

(2016) Bart Buitenhuis et al.   BMC GENETICS

Explorations in genome-wide association studies and network analyses with dairy cattle fertility traits

(2016) K.L. Parker Gaddis et al.   JOURNAL OF DAIRY SCIENCE

Short communication: Genomic selection in a crossbred cattle population using data from the Dairy Genetics East Africa Project

(2016) A. Brown et al.   JOURNAL OF DAIRY SCIENCE

The E3 ubiquitin ligase RNF144B is LPS-inducible in human, but not mouse, macrophages and promotes inducible IL-1β expression

(2016) Juliana K. Ariffin et al.   JOURNAL OF LEUKOCYTE BIOLOGY

rehh2.0: a reimplementation of the R packagerehhto detect positive selection from haplotype structure

(2016) Mathieu Gautier et al.   Molecular Ecology Resources

Fast and accurate long-range phasing in a UK Biobank cohort

(2016) Po-Ru Loh et al.   NATURE GENETICS

Genomic selection in multi-breed dairy cattle populations

(2016) John Bruce Cole et al.   REVISTA BRASILEIRA DE ZOOTECNIA-BRAZILIAN JOURNAL OF ANIMAL SCIENCE

Combined analysis of DNA methylome and transcriptome reveal novel candidate genes with susceptibility to bovine Staphylococcus aureus subclinical mastitis

(2016) Minyan Song et al.   Scientific Reports

Genome-Wide Association Study for Indicator Traits of Sexual Precocity in Nellore Cattle

(2016) Natalia Irano et al.   PLoS One

Genome-wide association study for semen production traits in Holstein-Friesian bulls

(2015) T. Suchocki et al.   JOURNAL OF DAIRY SCIENCE

Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis

(2015) Hussain Bahbahani et al.   Scientific Reports

Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds

(2014) Mahdi Saatchi et al.   BMC GENOMICS

Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

(2014) Saber Qanbari et al.   PLoS Genetics

Expression of candidate genes for residual feed intake in Angus cattle

(2013) W. Al-Husseini et al.   ANIMAL GENETICS

Detecting Natural Selection in Genomic Data

(2013) Joseph J. Vitti et al.   Annual Review of Genetics

SPOCK1 is a novel transforming growth factor-β target gene that regulates lung cancer cell epithelial-mesenchymal transition

(2013) Liyun Miao et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline

(2013) Jonathan P Saxe et al.   EMBO JOURNAL

Fast and accurate inference of local ancestry in Latino populations

(2012) Yael Baran et al.   BIOINFORMATICS

Validation of single nucleotide polymorphisms associated with milk production traits in dairy cattle

(2012) A.J. Chamberlain et al.   JOURNAL OF DAIRY SCIENCE

A genome-wide association study of direct gestation length in US Holstein and Italian Brown populations

(2011) C. Maltecca et al.   ANIMAL GENETICS

Quantitative trait loci for clinical mastitis on chromosomes 2, 6, 14 and 20 in Norwegian Red cattle

(2011) M. Sodeland et al.   ANIMAL GENETICS

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

(2011) John B Cole et al.   BMC GENOMICS

Genome-wide association studies of female reproduction in tropically adapted beef cattle1

(2011) R. J. Hawken et al.   JOURNAL OF ANIMAL SCIENCE

Footprints of selection in the ancestral admixture of a New World Creole cattle breed

(2011) MATHIEU GAUTIER et al.   MOLECULAR ECOLOGY

The importance of CELF control: molecular and biological roles of the CUG-BP, Elav-like family of RNA-binding proteins

(2011) Twishasri Dasgupta et al.   Wiley Interdisciplinary Reviews-RNA

The Effect of Recent Admixture on Inference of Ancient Human Population History

(2010) K. E. Lohmueller et al.   GENETICS

A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes

(2010) J.E. Pryce et al.   JOURNAL OF DAIRY SCIENCE

A whole genome association analysis identifies loci associated withMycobacterium aviumsubsp.paratuberculosisinfection status in US holstein cattle

(2009) M. Settles et al.   ANIMAL GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Genetic Variation in the Familial Mediterranean Fever Gene (MEFV) and Risk for Crohn's Disease and Ulcerative Colitis

(2009) Alexandra-Chloé Villani et al.   PLoS One

The Genome Response to Artificial Selection: A Case Study in Dairy Cattle

(2009) Laurence Flori et al.   PLoS One

Immunoglobulin superfamily member IgSF8 (EWI-2) and CD9 in fertilisation: evidence of distinct functions for CD9 and a CD9-associated protein in mammalian sperm–egg interaction

(2009) Amanda I. Glazar et al.   REPRODUCTION FERTILITY AND DEVELOPMENT

OAZ-t/OAZ3 Is Essential for Rigid Connection of Sperm Tails to Heads in Mouse

(2009) Keizo Tokuhiro et al.   PLoS Genetics

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE