Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep

Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep

(2017) Julie Demars et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus

(2016) Miguel Carneiro et al.   GENETICS

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

(2016) Simon Boitard et al.   GENETICS

Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus

(2016) Miguel Carneiro et al.   GENETICS

Uncovering Adaptation from Sequence Data: Lessons from Genome Resequencing of Four Cattle Breeds

(2016) Simon Boitard et al.   GENETICS

A 1.8-kb insertion in the 3′-UTR ofRXFP2is associated with polledness in sheep

(2015) Natalie Wiedemar et al.   ANIMAL GENETICS

Loci associated with adult stature also affect calf birth survival in cattle

(2015) Goutam Sahana et al.   BMC GENETICS

Linked genetic variants on chromosome 10 control ear morphology and body mass among dog breeds

(2015) Matthew Webster et al.   BMC GENOMICS

Genome-wide analysis reveals population structure and selection in Chinese indigenous sheep breeds

(2015) Caihong Wei et al.   BMC GENOMICS

A Point Mutation in Suppressor of Cytokine Signalling 2 (Socs2) Increases the Susceptibility to Inflammation of the Mammary Gland while Associated with Higher Body Weight and Size and Higher Milk Production in a Sheep Model

(2015) Rachel Rupp et al.   PLoS Genetics

Porcine methionine sulfoxide reductase B3: molecular cloning, tissue-specific expression profiles, and polymorphisms associated with ear size in Sus scrofa

(2015) Yuebo Zhang et al.   Journal of Animal Science and Biotechnology

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

A Non-Synonymous HMGA2 Variant Decreases Height in Shetland Ponies and Other Small Horses

(2015) Mirjam Frischknecht et al.   PLoS One

Signatures of selection in sheep bred for resistance or susceptibility to gastrointestinal nematodes

(2014) Kathryn M McRae et al.   BMC GENOMICS

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Identifying Causal Variants at Loci with Multiple Signals of Association

(2014) F. Hormozdiari et al.   GENETICS

Adaptations to Climate-Mediated Selective Pressures in Sheep

(2014) Feng-Hua Lv et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Wide Association Study Identifies 20 Novel Promising Genes Associated with Milk Fatty Acid Traits in Chinese Holstein

(2014) Cong Li et al.   PLoS One

Selection Signatures in Worldwide Sheep Populations

(2014) Maria-Ines Fariello et al.   PLoS One

A genome-wide association study indicatesLCORL/NCAPGas a candidate locus for withers height in German Warmblood horses

(2013) J. Tetens et al.   ANIMAL GENETICS

Signatures of selection identify loci associated with milk yield in sheep

(2013) Bianca Moioli et al.   BMC GENETICS

EBF2 Determines and Maintains Brown Adipocyte Identity

(2013) Sona Rajakumari et al.   Cell Metabolism

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Investigation of polymorphisms and association of the ABCG2 gene with milk production traits in sheep

(2013) M. Árnyasi et al.   Livestock Science

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

(2013) Mingzhou Li et al.   NATURE GENETICS

Genome-Wide Genetic Diversity and Differentially Selected Regions among Suffolk, Rambouillet, Columbia, Polypay, and Targhee Sheep

(2013) Lifan Zhang et al.   PLoS One

Genome-Wide Association Study Identifies Loci and Candidate Genes for Body Composition and Meat Quality Traits in Beijing-You Chickens

(2013) Ranran Liu et al.   PLoS One

Discovery of SNPs in RXFP2 related to horn types in sheep

(2013) Xiaolong Wang et al.   SMALL RUMINANT RESEARCH

12q14 microdeletion associated withHMGA2gene disruption and growth restriction

(2012) Fadel Alyaqoub et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Four Loci Explain 83% of Size Variation in the Horse

(2012) Shokouh Makvandi-Nejad et al.   PLoS One

Strong signatures of selection in the domestic pig genome

(2012) C.-J. Rubin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

A single nucleotide polymorphism on chromosome 10 is highly predictive for the polled phenotype in Australian Merino sheep

(2011) S. Dominik et al.   ANIMAL GENETICS

The role of bovine causal genes underlying dairy traits in Spanish Churra sheep

(2011) M. García-Fernández et al.   ANIMAL GENETICS

How selective sweeps in domestic animals provide new insight into biological mechanisms

(2011) L. Andersson   JOURNAL OF INTERNAL MEDICINE

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

(2011) SUSAN E. JOHNSTON et al.   MOLECULAR ECOLOGY

Using Regulatory and Epistatic Networks to Extend the Findings of a Genome Scan: Identifying the Gene Drivers of Pigmentation in Merino Sheep

(2011) Elsa García-Gámez et al.   PLoS One

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

(2011) Amaury Vaysse et al.   PLoS Genetics

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Evaluation of SNPs in the chicken HMGA2 gene as markers for body weight gain

(2010) C. Song et al.   ANIMAL GENETICS

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) Maxime Bonhomme et al.   GENETICS

Reduced versican cleavage due to Adamts9 haploinsufficiency is associated with cardiac and aortic anomalies

(2010) Christine B. Kern et al.   MATRIX BIOLOGY

Sequence characterization of the melanocortin 1 receptor (MC1R) gene in sheep with different coat colours and identification of the putative e allele at the ovine Extension locus

(2010) L. Fontanesi et al.   SMALL RUMINANT RESEARCH

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

(2010) Adam R. Boyko et al.   PLOS BIOLOGY

Revealing the History of Sheep Domestication Using Retrovirus Integrations

(2009) B. Chessa et al.   SCIENCE

Meta-Analysis of Genome-Wide Scans for Human Adult Stature Identifies Novel Loci and Associations with Measures of Skeletal Frame Size

(2009) Nicole Soranzo et al.   PLoS Genetics

Single-Nucleotide-Polymorphism-Based Association Mapping of Dog Stereotypes

(2008) Paul Jones et al.   GENETICS

The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals

(2008) S. Naderi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Domestication and early agriculture in the Mediterranean Basin: Origins, diffusion, and impact

(2008) M. A. Zeder   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pleiotropy in the melanocortin system, coloration and behavioural syndromes

(2008) A DUCREST et al.   TRENDS IN ECOLOGY & EVOLUTION