Chromosome-level genome assembly of Bactrocera correcta provides insights into its adaptation and invasion mechanisms

Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution

(2022) Chang-Song Wu et al.   BMC GENOMICS

Discrete roles of Ir76b ionotropic coreceptor impact olfaction, blood feeding, and mating in the malaria vector mosquito Anopheles coluzzii

(2022) Zi Ye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Author Correction: Chromosome-level genome assembly of Bactrocera dorsalis reveals its adaptation and invasion mechanisms

(2022) Fan Jiang et al.   Communications Biology

Abnormal Antennal Olfactory Sensilla Phenotypes Involved in Olfactory Deficit in Bactrocera correcta (Diptera: Tephritidae)

(2022) Kai-Fei Guo et al.   Insects

KEGG for taxonomy-based analysis of pathways and genomes

(2022) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Sensitive protein alignments at tree-of-life scale using DIAMOND

(2021) Benjamin Buchfink et al.   NATURE METHODS

Identifying and removing haplotypic duplication in primary genome assemblies

(2020) Dengfeng Guan et al.   BIOINFORMATICS

Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

(2020) Alice B. Dennis et al.   BMC GENOMICS

Analyses of chemosensory genes provide insight into the evolution of behavioral differences to phytochemicals in Bactrocera species

(2020) Zhongzhen Wu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

(2020) T. Rhyker Ranallo-Benavidez et al.   Nature Communications

Imaginal Disc Growth Factor 6 (Idgf6) Is Involved in Larval and Adult Wing Development in Bactrocera correcta (Bezzi) (Diptera: Tephritidae)

(2020) Yan Zhao et al.   Frontiers in Genetics

bitacora : A comprehensive tool for the identification and annotation of gene families in genome assemblies

(2020) Joel Vizueta et al.   Molecular Ecology Resources

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Detoxifying enzyme complements and host use phenotypes in 160 insect species

(2019) Rahul V Rane et al.   Current Opinion in Insect Science

A transcriptional and functional analysis of heat hardening in two invasive fruit fly species, Bactrocera dorsalis and Bactrocera correcta

(2019) Xinyue Gu et al.   Evolutionary Applications

Insect genomes: progress and challenges

(2019) Fei Li et al.   INSECT MOLECULAR BIOLOGY

MCMCtreeR: functions to prepare MCMCtree analyses and visualize posterior ages on trees

(2019) Mark N Puttick   BIOINFORMATICS

Climate change impacts on the global potential geographical distribution of the agricultural invasive pest, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae)

(2019) Yujia Qin et al.   CLIMATIC CHANGE

Functional characterization of olfactory receptors in three Dacini fruit flies (Diptera: Tephritidae) that respond to 1-nonanol analogs as components in the rectal glands

(2019) Hajime Ono et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

The genome of a subterrestrial nematode reveals adaptations to heat

(2019) Deborah J. Weinstein et al.   Nature Communications

Functional characterization of olfactory receptors in the Oriental fruit fly Bactrocera dorsalis that respond to plant volatiles

(2018) Hitomi Miyazaki et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The genomic and functional landscapes of developmental plasticity in the American cockroach

(2018) Sheng Li et al.   Nature Communications

Variation in limonin and nomilin content in citrus fruits of eight varieties determined by modified HPLC

(2018) Shengjia Huang et al.   FOOD SCIENCE AND BIOTECHNOLOGY

Overexpression of CYP6ER1 associated with clothianidin resistance in Nilaparvata lugens (Stål)

(2018) Ruoheng Jin et al.   PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Do thermal tolerances and rapid thermal responses contribute to the invasion potential of Bactrocera dorsalis (Diptera: Tephritidae)?

(2017) Welma Pieterse et al.   JOURNAL OF INSECT PHYSIOLOGY

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

(2017) Olga Dudchenko et al.   SCIENCE

KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences

(2017) Dominik R. Laetsch et al.   G3-Genes Genomes Genetics

Olfactory Plasticity: Variation in the Expression of Chemosensory Receptors in Bactrocera dorsalis in Different Physiological States

(2017) Sha Jin et al.   Frontiers in Physiology

Taxonomy, Ecology, and Management of Native and Exotic Fruit Fly Species in Africa

(2016) Sunday Ekesi et al.   Annual Review of Entomology

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

(2016) Neva C. Durand et al.   Cell Systems

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

(2016) Neva C. Durand et al.   Cell Systems

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Global Establishment Risk of Economically Important Fruit Fly Species (Tephritidae)

(2015) Yujia Qin et al.   PLoS One

Seeing is believing: Dynamic evolution of gene families

(2015) Rayna M. Harris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multigene Family Evolution: Perspectives from Insect Chemoreceptors

(2015) Richard Benton   TRENDS IN ECOLOGY & EVOLUTION

An Overview of Pest Species of Bactrocera Fruit Flies (Diptera: Tephritidae) and the Integration of Biopesticides with Other Biological Approaches for Their Management with a Focus on the Pacific Region

(2015) Roger Vargas et al.   Insects

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Rapid diagnosis of the economically important fruit fly, Bactrocera correcta (Diptera: Tephritidae) based on a species-specific barcoding cytochrome oxidase I marker

(2013) F. Jiang et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

In silicocloning and annotation of genes involved in the digestion, detoxification and RNA interference mechanism in the midgut ofBactrocera dorsalis[Hendel (Diptera: Tephritidae)]

(2013) G.-M. Shen et al.   INSECT MOLECULAR BIOLOGY

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dedicated olfactory neurons mediating attraction behavior to ammonia and amines in Drosophila

(2013) S. Min et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene amplification and microsatellite polymorphism underlie a recent insect host shift

(2013) C. Bass et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Molecular Basis for Attractive Salt-Taste Coding in Drosophila

(2013) Y. V. Zhang et al.   SCIENCE

Odorant Reception in Insects: Roles of Receptors, Binding Proteins, and Degrading Enzymes

(2012) Walter S. Leal   Annual Review of Entomology

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Distinct role of Hsp70 in Drosophila hemocytes during severe hypoxia

(2011) Priti Azad et al.   FREE RADICAL BIOLOGY AND MEDICINE

Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System

(2011) Filipe G. Vieira et al.   Genome Biology and Evolution

Silkworm Thermal Biology: A Review of Heat Shock Response, Heat Shock Proteins and Heat Acclimation in the Domesticated Silkworm,Bombyx mori

(2011) H. B. Manjunatha et al.   JOURNAL OF INSECT SCIENCE

An olfactory receptor for food-derived odours promotes male courtship in Drosophila

(2011) Yael Grosjean et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Acid sensing by the Drosophila olfactory system

(2010) Minrong Ai et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila

(2009) Richard Benton et al.   CELL

The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity

(2008) Masatoshi Nei et al.   NATURE REVIEWS GENETICS