The genome of a subterrestrial nematode reveals adaptations to heat
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Title
The genome of a subterrestrial nematode reveals adaptations to heat
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-11-21
DOI
10.1038/s41467-019-13245-8
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- (2016) Gaëtan Borgonie et al. BIOLOGICAL BULLETIN
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- (2015) Felipe A. Simão et al. BIOINFORMATICS
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- The evolution of parasitism in Nematoda
- (2014) MARK BLAXTER et al. PARASITOLOGY
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- (2013) T. J. Wheeler et al. BIOINFORMATICS
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