bitacora : A comprehensive tool for the identification and annotation of gene families in genome assemblies

Understanding the early evolutionary stages of a tandem D. melanogaster-specific gene family: a structural and functional population study

(2020) Bryan Clifton et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluating the performance of targeted sequence capture, RNA‐Seq, and degenerate‐primer PCR cloning for sequencing the largest mammalian multigene family

(2019) Laurel R. Yohe et al.   Molecular Ecology Resources

Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi

(2018) Jens Keilwagen et al.   BMC BIOINFORMATICS

Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Chelicerates

(2018) Joel Vizueta et al.   Genome Biology and Evolution

Using intron position conservation for homology-based gene prediction

(2016) Jens Keilwagen et al.   NUCLEIC ACIDS RESEARCH

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

The Insect Chemoreceptor Superfamily Is Ancient in Animals

(2015) Hugh M. Robertson   CHEMICAL SENSES

Drosophila Chemoreceptors: A Molecular Interface Between the Chemical World and the Brain

(2015) Ryan M. Joseph et al.   TRENDS IN GENETICS

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

Transcriptomics and Identification of the Chemoreceptor Superfamily of the Pupal Parasitoid of the Oriental Fruit Fly, Spalangia endius Walker (Hymenoptera: Pteromalidae)

(2014) Yuping Zhang et al.   PLoS One

Spider genomes provide insight into composition and evolution of venom and silk

(2014) Kristian W. Sanggaard et al.   Nature Communications

Soluble proteins of chemical communication: an overview across arthropods

(2014) Paolo Pelosi et al.   Frontiers in Physiology

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods

(2013) Zhijian Cao et al.   Nature Communications

Web Apollo: a web-based genomic annotation editing platform

(2013) Eduardo Lee et al.   GENOME BIOLOGY

A beginner's guide to eukaryotic genome annotation

(2012) Mark Yandell et al.   NATURE REVIEWS GENETICS

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS