Genome‐environment association analyses reveal geographically restricted adaptive divergence across the range of the widespread Eurasian carnivore Lynx lynx (Linnaeus, 1758)

Effect of microhabitat characteristics for predicting habitat suitability for a stalking large carnivore—the Eurasian lynx in middle Europe

(2023) K. Schmidt et al.   ANIMAL CONSERVATION

Genome-wide diversity loss in reintroduced Eurasian lynx populations urges immediate conservation management

(2022) Sarah Ashley Mueller et al.   BIOLOGICAL CONSERVATION

Ancient genome provides insights into the history of Eurasian lynx in Iberia and Western Europe

(2022) María Lucena-Perez et al.   QUATERNARY SCIENCE REVIEWS

The inflated significance of neutral genetic diversity in conservation genetics

(2021) João C. Teixeira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitogenome Phylogeny Including Data from Additional Subspecies Provides New Insights into the Historical Biogeography of the Eurasian lynx Lynx lynx

(2021) Deniz Mengüllüoğlu et al.   Genes

History, demography and genetic status of Balkan and Caucasian Lynx lynx (Linnaeus, 1758) populations revealed by genome‐wide variation

(2021) Enrico Bazzicalupo et al.   DIVERSITY AND DISTRIBUTIONS

The relevance of genetic structure in ecotype designation and conservation management

(2021) Astrid V. Stronen et al.   Evolutionary Applications

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts

(2020) Maria Lucena‐Perez et al.   MOLECULAR ECOLOGY

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

(2020) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology resource: enriching a GOld mine

(2020) et al.   NUCLEIC ACIDS RESEARCH

Genome‐scale sampling suggests cryptic epigenetic structuring and insular divergence in Canada lynx

(2019) J. Meröndun et al.   MOLECULAR ECOLOGY

Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections

(2019) Orly Razgour et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of genetic adaptation on chimpanzee subspecies differentiation

(2019) Joshua M. Schmidt et al.   PLoS Genetics

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Detecting signatures of positive selection in non-model species using genomic data

(2018) Hannah Weigand et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Effects of structural heterogeneity on the diurnal temperature range in temperate forest ecosystems

(2018) Martin Ehbrecht et al.   FOREST ECOLOGY AND MANAGEMENT

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Detecting recent selective sweeps while controlling for mutation rate and background selection

(2015) Christian D. Huber et al.   MOLECULAR ECOLOGY

Genetic subdivision and candidate genes under selection in North American grey wolves

(2015) Rena M. Schweizer et al.   MOLECULAR ECOLOGY

Long-Range Gene Flow and the Effects of Climatic and Ecological Factors on Genetic Structuring in a Large, Solitary Carnivore: The Eurasian Lynx

(2015) Mirosław Ratkiewicz et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Genome Scans for Detecting Footprints of Local Adaptation Using a Bayesian Factor Model

(2014) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Large-Scale Genetic Structuring of a Widely Distributed Carnivore - The Eurasian Lynx (Lynx lynx)

(2014) Eli K. Rueness et al.   PLoS One

The magnitude of local adaptation under genotype-dependent dispersal

(2013) Daniel I. Bolnick et al.   Ecology and Evolution

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The importance of niches for the maintenance of species diversity

(2009) Jonathan M. Levine et al.   NATURE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS