Genome-wide diversity loss in reintroduced Eurasian lynx populations urges immediate conservation management

Long-distance Eurasian lynx dispersal – a prospect for connecting native and reintroduced populations in Central Europe

(2021) Barbora Gajdárová et al.   CONSERVATION GENETICS

Genomic data of different resolutions reveal consistent inbreeding estimates but contrasting homozygosity landscapes for the threatened Aotearoa New Zealand hihi

(2021) Laura Duntsch et al.   MOLECULAR ECOLOGY

How to study runs of homozygosity using PLINK? A guide for analyzing medium density SNP data in livestock and pet species

(2020) R. Meyermans et al.   BMC GENOMICS

Planning the peninsula-wide recovery of the Iberian lynx: identification of favourable habitat areas

(2020) Germán Garrote et al.   MAMMALIA

Genomic patterns in the widespread Eurasian lynx shaped by Late Quaternary climatic fluctuations and anthropogenic impacts

(2020) Maria Lucena‐Perez et al.   MOLECULAR ECOLOGY

The rise of a large carnivore population in Central Europe: genetic evaluation of lynx reintroduction in the Harz Mountains

(2020) Sarah Ashley Mueller et al.   CONSERVATION GENETICS

An 85K SNP Array Uncovers Inbreeding and Cryptic Relatedness in an Antarctic Fur Seal Breeding Colony

(2020) Emily Humble et al.   G3-Genes Genomes Genetics

Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction

(2019) Jacqueline A. Robinson et al.   Science Advances

The Genome of the Endangered Dryas Monkey Provides New Insights into the Evolutionary History of the Vervets

(2019) Tom van der Valk et al.   MOLECULAR BIOLOGY AND EVOLUTION

Restoring apex predators can reduce mesopredator abundances

(2019) José Jiménez et al.   BIOLOGICAL CONSERVATION

The coat pattern in the Carpathian population of Eurasian lynx has changed: a sign of demographic bottleneck and limited connectivity

(2019) Jakub Kubala et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Too much of a good thing; successful reintroduction leads to overpopulation in a threatened mammal

(2018) K.E. Moseby et al.   BIOLOGICAL CONSERVATION

Illegal hunting as a major driver of the source-sink dynamics of a reintroduced lynx population in Central Europe

(2018) M. Heurich et al.   BIOLOGICAL CONSERVATION

Inbreeding and runs of homozygosity before and after genomic selection in North American Holstein cattle

(2018) Mehrnush Forutan et al.   BMC GENOMICS

Runs of homozygosity: windows into population history and trait architecture

(2018) Francisco C. Ceballos et al.   NATURE REVIEWS GENETICS

Genetic constraints of population expansion of the Carpathian lynx at the western edge of its native distribution range in Central Europe

(2018) J. Krojerová-Prokešová et al.   HEREDITY

Population genomics analyses of European ibex species show lower diversity and higher inbreeding in reintroduced populations

(2017) Christine Grossen et al.   Evolutionary Applications

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

(2017) Alison G. Nazareno et al.   Molecular Ecology Resources

Genomic consequences of intensive inbreeding in an isolated wolf population

(2017) Marty Kardos et al.   Nature Ecology & Evolution

The effect of reintroductions on the genetic variability in Eurasian lynx populations: the cases of Bohemian–Bavarian and Vosges–Palatinian populations

(2016) James K. Bull et al.   CONSERVATION GENETICS

Mortality in the Eurasian lynx population in Croatia over the course of 40 years

(2016) Magda Sindičić et al.   MAMMALIAN BIOLOGY

Measuring individual inbreeding in the age of genomics: marker-based measures are better than pedigrees

(2015) M Kardos et al.   HEREDITY

Seven common mistakes in population genetics and how to avoid them

(2015) Patrick G. Meirmans   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

(2015) Y. Xue et al.   SCIENCE

From promise to practice: pairing non-invasive sampling with genomics in conservation

(2015) Michael A. Russello et al.   PeerJ

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Long-Range Gene Flow and the Effects of Climatic and Ecological Factors on Genetic Structuring in a Large, Solitary Carnivore: The Eurasian Lynx

(2015) Mirosław Ratkiewicz et al.   PLoS One

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Identifying correlates of success and failure of native freshwater fish reintroductions

(2014) Jennifer L. Cochran-Biederman et al.   CONSERVATION BIOLOGY

Large-Scale Genetic Structuring of a Widely Distributed Carnivore - The Eurasian Lynx (Lynx lynx)

(2014) Eli K. Rueness et al.   PLoS One

The Genetic Legacy of Multiple Beaver Reintroductions in Central Europe

(2014) Christiane Frosch et al.   PLoS One

Admixture and Gene Flow from Russia in the Recovering Northern European Brown Bear (Ursus arctos)

(2014) Alexander Kopatz et al.   PLoS One

Recovery of large carnivores in Europe’s modern human-dominated landscapes

(2014) Guillaume Chapron et al.   SCIENCE

Status and Ecological Effects of the World's Largest Carnivores

(2014) W. J. Ripple et al.   SCIENCE

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

(2013) Filipe G. Vieira et al.   GENOME RESEARCH

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

North-South Differentiation and a Region of High Diversity in European Wolves (Canis lupus)

(2013) Astrid V. Stronen et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

How successful are plant species reintroductions?

(2010) Sandrine Godefroid et al.   BIOLOGICAL CONSERVATION

The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

(2010) S T Kalinowski   HEREDITY

Recovery of the Alpine lynx Lynx lynx metapopulation

(2010) Anja Molinari-Jobin et al.   ORYX

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetic structure of the Eurasian lynx population in north-eastern Poland and the Baltic states

(2009) Krzysztof Schmidt et al.   CONSERVATION GENETICS

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

The genealogy and genetic viability of reintroduced Yellowstone grey wolves

(2007) BRIDGETT M. VONHOLDT et al.   MOLECULAR ECOLOGY

Directions in reintroduction biology

(2007) D ARMSTRONG et al.   TRENDS IN ECOLOGY & EVOLUTION