Genetic and phenotypic intra-species diversity of alga Tisochrysis lutea reveals original genetic structure and domestication potential

Lessons from a soybean collection

(2023) Randall Nelson   CROP SCIENCE

Book Review: Conservation and the Genomics of Populations: Third edition

(2023) Carlos Driscoll   JOURNAL OF HEREDITY

Phenotype stability and dynamics of transposable elements in a strain of the microalga Tisochrysis lutea with improved lipid traits

(2023) Jérémy Berthelier et al.   PLoS One

A robust approach to estimate relative phytoplankton cell abundances from metagenomes

(2022) Juan José Pierella Karlusich et al.   Molecular Ecology Resources

Production of fucoxanthin from the microalga Tisochrysis lutea in the bubble column photobioreactor applying mass transfer coefficient

(2022) Sonia Mohamadnia et al.   JOURNAL OF BIOTECHNOLOGY

Microalgae-based livestock wastewater treatment (MbWT) as a circular bioeconomy approach: Enhancement of biomass productivity, pollutant removal and high-value compound production

(2022) Anaid López-Sánchez et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Random Mutagenesis as a Promising Tool for Microalgal Strain Improvement towards Industrial Production

(2022) Mafalda Trovão et al.   Marine Drugs

Industry chain and challenges of microalgal food industry-a review

(2022) Yuanhao Chen et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Light-response in two clonal strains of the haptophyte Tisochrysis lutea: Evidence for different photoprotection strategies

(2022) Anne Pajot et al.   Algal Research-Biomass Biofuels and Bioproducts

The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms.

(2021) Caroline Vernette et al.   Molecular Ecology Resources

Grand Challenges in Microalgae Domestication

(2021) Eric Maréchal   Frontiers in Plant Science

Co-production of fucoxanthin, docosahexaenoic acid (DHA) and bioethanol from the marine microalga Tisochrysis lutea

(2021) Malith Premaratne et al.   BIOCHEMICAL ENGINEERING JOURNAL

Phytoplankton in the Tara Ocean

(2020) Juan José Pierella Karlusich et al.   Annual Review of Marine Science

Analysis of Scientific Research Driving Microalgae Market Opportunities in Europe

(2020) Judith Rumin et al.   Marine Drugs

Tara Oceans: towards global ocean ecosystems biology

(2020) Shinichi Sunagawa et al.   NATURE REVIEWS MICROBIOLOGY

Establishment of a chloroplast transformation system in Tisochrysis lutea

(2020) Yuntai Bo et al.   JOURNAL OF APPLIED PHYCOLOGY

Fine Mapping to Identify the Functional Genetic Locus for Red Coloration in Pyropia yezoensis Thallus

(2020) Xinzi Yu et al.   Frontiers in Plant Science

Improvement of Chemical Composition of Tisochrysis lutea Grown Mixotrophically under Nitrogen Depletion towards Biodiesel Production

(2020) Adel W. Almutairi   MOLECULES

Enhancing PUFA-rich polar lipids in Tisochrysis lutea using adaptive laboratory evolution (ALE) with oscillating thermal stress

(2020) Manon Gachelin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The chloroplast genome of the marine microalga Tisochrysis lutea

(2019) Alejandra B. Méndez-Leyva et al.   Mitochondrial DNA Part B-Resources

Global distribution and diversity of Chaetoceros (Bacillariophyta, Mediophyceae): integration of classical and novel strategies

(2019) Daniele De Luca et al.   PeerJ

A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

(2019) Achal Rastogi et al.   ISME Journal

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

(2018) Jérémy Berthelier et al.   BMC GENOMICS

Accurate detection of complex structural variations using single-molecule sequencing

(2018) Fritz J. Sedlazeck et al.   NATURE METHODS

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

(2018) Emilie Villar et al.   NUCLEIC ACIDS RESEARCH

Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea

(2018) S. Thiriet-Rupert et al.   Algal Research-Biomass Biofuels and Bioproducts

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

(2018) Gregory Carrier et al.   Algal Research-Biomass Biofuels and Bioproducts

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

(2018) Tom O. Delmont et al.   PeerJ

Extreme Lewontin’s Paradox in Ubiquitous Marine Phytoplankton Species

(2018) Dmitry A Filatov   MOLECULAR BIOLOGY AND EVOLUTION

Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes

(2017) Marc Krasovec et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-density genetic map and identification of QTLs for responses to temperature and salinity stresses in the model brown alga Ectocarpus

(2017) Komlan Avia et al.   Scientific Reports

Outdoor production of Tisochrysis lutea in pilot-scale tubular photobioreactors

(2016) Davide Ippoliti et al.   JOURNAL OF APPLIED PHYCOLOGY

Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum

(2016) Mickael Le Gac et al.   MOLECULAR ECOLOGY

Genetic improvement of the microalga Phaeodactylum tricornutum for boosting neutral lipid accumulation

(2015) Jiao Xue et al.   METABOLIC ENGINEERING

Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies

(2015) Sean D. Gallaher et al.   PLANT CELL

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Tara Oceans studies plankton at planetary scale

(2015) P. Bork et al.   SCIENCE

Concerns in the application of fluorescent probes DCDHF-DA, DHR 123 and DHE to measure reactive oxygen species in vitro

(2015) Mazyar Yazdani   TOXICOLOGY IN VITRO

Food and feed products from micro-algae: Market opportunities and challenges for the EU

(2015) Mauro Vigani et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

MindTheGap: integrated detection and assembly of short and long insertions

(2014) G. Rizk et al.   BIOINFORMATICS

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

(2014) Romain Blanc-Mathieu et al.   BMC GENOMICS

Structural variation and genome complexity: is dispensable really dispensable?

(2014) Fabio Marroni et al.   CURRENT OPINION IN PLANT BIOLOGY

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Comparative proteomics reveals proteins impacted by nitrogen deprivation in wild-type and high lipid-accumulating mutant strains of Tisochrysis lutea

(2014) M. Garnier et al.   Journal of Proteomics

The Cyanobacterial Photoactive Orange Carotenoid Protein Is an Excellent Singlet Oxygen Quencher

(2014) A. Sedoud et al.   PLANT CELL

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

(2014) Wan-Ping Lee et al.   PLoS One

On the description of Tisochrysis lutea gen. nov. sp. nov. and Isochrysis nuda sp. nov. in the Isochrysidales, and the transfer of Dicrateria to the Prymnesiales (Haptophyta)

(2013) El Mahdi Bendif et al.   JOURNAL OF APPLIED PHYCOLOGY

Pan genome of the phytoplankton Emiliania underpins its global distribution

(2013) Betsy A. Read et al.   NATURE

Enhancement of neutral lipid productivity in the microalgaIsochrysisaffinisGalbana(T-Iso) by a mutation-selection procedure

(2012) Gaël Bougaran et al.   BIOTECHNOLOGY AND BIOENGINEERING

The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms

(2012) Christian Beck et al.   BMC GENOMICS

Growth and pigment accumulation in nutrient-depleted Isochrysis aff. galbana T-ISO

(2012) Kim J. M. Mulders et al.   JOURNAL OF APPLIED PHYCOLOGY

Cryopreservation of four valuable strains of microalgae, including viability and characteristics during 15 years of cryostorage

(2012) Koichi Nakanishi et al.   JOURNAL OF APPLIED PHYCOLOGY

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Optimizing conditions for the continuous culture of Isochrysis affinis galbana relevant to commercial hatcheries

(2011) J. Marchetti et al.   AQUACULTURE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Selection, breeding and engineering of microalgae for bioenergy and biofuel production

(2011) Anthony W.D. Larkum et al.   TRENDS IN BIOTECHNOLOGY

Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi

(2010) ANNA GODHE et al.   MOLECULAR ECOLOGY

Limits to gene flow in a cosmopolitan marine planktonic diatom

(2010) G. Casteleyn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

GENETIC POPULATION STRUCTURE OFPSEUDO-NITZSCHIA PUNGENS(BACILLARIOPHYCEAE) FROM THE PACIFIC NORTHWEST AND THE NORTH SEA

(2009) Nicolaus G. Adams et al.   JOURNAL OF PHYCOLOGY

Selection for fitness at the individual or population levels: Modelling effects of genetic modifications in microalgae on productivity and environmental safety

(2009) Kevin J. Flynn et al.   JOURNAL OF THEORETICAL BIOLOGY

Highly Differentiated Populations of the Freshwater Diatom Sellaphora capitata Suggest Limited Dispersal and Opportunities for Allopatric Speciation

(2009) Katharine M. Evans et al.   PROTIST

In search of new tractable diatoms for experimental biology

(2008) Victor A. Chepurnov et al.   BIOESSAYS

Diversity and evolution of marine phytoplankton

(2008) Nathalie Simon et al.   COMPTES RENDUS BIOLOGIES