Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
Authors
Keywords
-
Journal
PeerJ
Volume 6, Issue -, Pages e4320
Publisher
PeerJ
Online
2018-01-25
DOI
10.7717/peerj.4320
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents
- (2017) Rika E. Anderson et al. Nature Communications
- Glucose Uptake in Prochlorococcus: Diversity of Kinetics and Effects on the Metabolism
- (2017) María del Carmen Muñoz-Marín et al. Frontiers in Microbiology
- Metagenomics as a preliminary screen for antimicrobial bioprospecting
- (2016) Soha Al-Amoudi et al. GENE
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
- (2016) Stephen Nayfach et al. GENOME RESEARCH
- Global biogeography of Prochlorococcus genome diversity in the surface ocean
- (2016) Alyssa G Kent et al. ISME Journal
- Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific
- (2016) Alyse A Larkin et al. ISME Journal
- Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
- (2016) Matthew L Bendall et al. ISME Journal
- Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium
- (2016) Stephanie S Porter et al. ISME Journal
- Strain-level microbial epidemiology and population genomics from shotgun metagenomics
- (2016) Matthias Scholz et al. NATURE METHODS
- Patient-Specific Bacteroides Genome Variants in Pouchitis
- (2016) Joseph H. Vineis et al. mBio
- A catalogue of 136 microbial draft genomes from Red Sea metagenomes
- (2016) Mohamed F. Haroon et al. Scientific Data
- Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community
- (2016) Stephan Thies et al. Scientific Reports
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Tara Oceans studies plankton at planetary scale
- (2015) P. Bork et al. SCIENCE
- Functional Basis of Microorganism Classification
- (2015) Chengsheng Zhu et al. PLoS Computational Biology
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- ITEP: An integrated toolkit for exploration of microbial pan-genomes
- (2014) Matthew N Benedict et al. BMC GENOMICS
- Prochlorococcus: the structure and function of collective diversity
- (2014) Steven J. Biller et al. NATURE REVIEWS MICROBIOLOGY
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- PhyloSift: phylogenetic analysis of genomes and metagenomes
- (2014) Aaron E. Darling et al. PeerJ
- Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
- (2014) Steven J. Biller et al. Scientific Data
- Ecology of marine Bacteroidetes: a comparative genomics approach
- (2013) Beatriz Fernández-Gómez et al. ISME Journal
- A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology
- (2013) A. Murat Eren et al. PLoS One
- Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean
- (2013) M. d. C. Munoz-Marin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
- (2013) P. Flombaum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Patterns and architecture of genomic islands in marine bacteria
- (2012) Beatriz Fernández-Gómez et al. BMC GENOMICS
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Comparative Genomics of Klebsiella pneumoniae Strains with Different Antibiotic Resistance Profiles
- (2011) Vinod Kumar et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean
- (2011) Pia H Moisander et al. ISME Journal
- ggplot2: Elegant Graphics for Data Analysis
- (2011) Cedric Ginestet JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY
- Genomic island variability facilitates Prochlorococcus–virus coexistence
- (2011) Sarit Avrani et al. NATURE
- Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
- (2011) André E Minoche et al. GENOME BIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans
- (2010) Rex R Malmstrom et al. ISME Journal
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Ecosystem-specific selection pressures revealed through comparative population genomics
- (2010) M. L. Coleman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of Prochlorococcus clades from iron-depleted oceanic regions
- (2010) D. B. Rusch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Biogeography of the Sulfolobus islandicus pan-genome
- (2009) M. L. Reno et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Glucose Uptake and Its Effect on Gene Expression in Prochlorococcus
- (2008) Guadalupe Gómez-Baena et al. PLoS One
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started