SEBP_HNHC: Stacking Ensemble-based Bi-level Predictor for Human Non-Histone Crotonylation combining with iterative feature representation strategy

Adapt-Kcr: a novel deep learning framework for accurate prediction of lysine crotonylation sites based on learning embedding features and attention architecture

(2022) Zutan Li et al.   BRIEFINGS IN BIOINFORMATICS

NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning

(2021) Md Mehedi Hasan et al.   BRIEFINGS IN BIOINFORMATICS

nhKcr: a new bioinformatics tool for predicting crotonylation sites on human nonhistone proteins based on deep learning

(2021) Yong-Zi Chen et al.   BRIEFINGS IN BIOINFORMATICS

Post-Translational Modification Networks of Contractile and Cellular Stress Response Proteins in Bladder Ischemia

(2021) Jing-Hua Yang et al.   Cells

STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction

(2021) Shaherin Basith et al.   BRIEFINGS IN BIOINFORMATICS

BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models

(2021) Yanhua Qiao et al.   BIOINFORMATICS

Computational prediction of protein ubiquitination sites mapping on Arabidopsis thaliana

(2020) Md. Parvez Mosharaf et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Global crotonylome reveals CDYL-regulated RPA1 crotonylation in homologous recombination–mediated DNA repair

(2020) Huajing Yu et al.   Science Advances

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method

(2020) Hao Lv et al.   BRIEFINGS IN BIOINFORMATICS

Iterative feature representations improve N4-methylcytosine site prediction

(2019) Leyi Wei et al.   BIOINFORMATICS

Functions and mechanisms of lysine crotonylation

(2019) Junhu Wan et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou’s 5-step rule

(2019) Sharaf Jameel Malebary et al.   PLoS One

iRNA-m7G: Identifying N7-methylguanosine Sites by Fusing Multiple Features

(2019) Wei Chen et al.   Molecular Therapy-Nucleic Acids

ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides

(2018) Leyi Wei et al.   BIOINFORMATICS

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences

(2018) Zhen Chen et al.   BIOINFORMATICS

Feature Extractions for Computationally Predicting Protein Post- Translational Modifications

(2018) Guohua Huang et al.   Current Bioinformatics

Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework

(2018) Yanju Zhang et al.   BRIEFINGS IN BIOINFORMATICS

iKcr-PseEns: Identify lysine crotonylation sites in histone proteins with pseudo components and ensemble classifier

(2017) Wang-Ren Qiu et al.   GENOMICS

Prediction of lysine crotonylation sites by incorporating the composition of k -spaced amino acid pairs into Chou’s general PseAAC

(2017) Zhe Ju et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

(2015) Fuyi Li et al.   BIOINFORMATICS

Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation

(2015) Benjamin R. Sabari et al.   MOLECULAR CELL

Identification of ‘erasers’ for lysine crotonylated histone marks using a chemical proteomics approach

(2014) Xiucong Bao et al.   eLife

SUMOhydro: A Novel Method for the Prediction of Sumoylation Sites Based on Hydrophobic Properties

(2012) Yong-Zi Chen et al.   PLoS One

Prediction of Protein Phosphorylation Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2012) Xiaowei Zhao et al.   PLoS One

Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences

(2011) Tzong-Yi Lee et al.   BIOINFORMATICS

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS