BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models

BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides

(2021) Phasit Charoenkwan et al.   BIOINFORMATICS

A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information

(2021) Nguyen Quoc Khanh Le et al.   BRIEFINGS IN BIOINFORMATICS

Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

(2021) Alexander Rives et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global crotonylome reveals CDYL-regulated RPA1 crotonylation in homologous recombination–mediated DNA repair

(2020) Huajing Yu et al.   Science Advances

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method

(2020) Hao Lv et al.   BRIEFINGS IN BIOINFORMATICS

Proteomic approaches beyond expression profiling and PTM analysis

(2018) Jiaqi Fu et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

HIV latency is reversed by ACSS2-driven histone crotonylation

(2018) Guochun Jiang et al.   JOURNAL OF CLINICAL INVESTIGATION

Identification of the YEATS domain of GAS41 as a pH-dependent reader of histone succinylation

(2018) Yi Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Crotonylome Analysis Expands the Roles of p300 in the Regulation of Lysine Crotonylation Pathway

(2018) He Huang et al.   PROTEOMICS

Microbiota derived short chain fatty acids promote histone crotonylation in the colon through histone deacetylases

(2018) Rachel Fellows et al.   Nature Communications

Lysine benzoylation is a histone mark regulated by SIRT2

(2018) He Huang et al.   Nature Communications

PLMD: An updated data resource of protein lysine modifications

(2017) Haodong Xu et al.   Journal of Genetics and Genomics

Prediction of lysine crotonylation sites by incorporating the composition of k -spaced amino acid pairs into Chou’s general PseAAC

(2017) Zhe Ju et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Large-Scale Identification of Protein Crotonylation Reveals Its Role in Multiple Cellular Functions

(2017) Wei Wei et al.   JOURNAL OF PROTEOME RESEARCH

Chromodomain Protein CDYL Acts as a Crotonyl-CoA Hydratase to Regulate Histone Crotonylation and Spermatogenesis

(2017) Shumeng Liu et al.   MOLECULAR CELL

SnapShot: Histone Modifications

(2014) He Huang et al.   CELL

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH