iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou’s 5-step rule

iMotor-CNN: Identifying molecular functions of cytoskeleton motor proteins using 2D convolutional neural network via Chou's 5-step rule

(2019) Nguyen Quoc Khanh Le et al.   ANALYTICAL BIOCHEMISTRY

iHyd-PseAAC (EPSV): Identifying Hydroxylation Sites in Proteins by Extracting Enhanced Position and Sequence Variant Feature via Chou's 5- Step Rule and General Pseudo Amino Acid Composition

(2019) Asma Ehsan et al.   CURRENT GENOMICS

iDNA6mA (5-step rule): Identification of DNA N6-methyladenine sites in the rice genome by intelligent computational model via Chou's 5-step rule

(2019) Muhammad Tahir et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

iPhosT-PseAAC: Identify phosphothreonine sites by incorporating sequence statistical moments into PseAAC

(2018) Yaser Daanial Khan et al.   ANALYTICAL BIOCHEMISTRY

4mCPred: Machine Learning Methods for DNA N4-methylcytosine sites Prediction

(2018) Wenying He et al.   BIOINFORMATICS

A Novel Modeling in Mathematical Biology for Classification of Signal Peptides

(2018) Asma Ehsan et al.   Scientific Reports

Fu-SulfPred: Identification of Protein S-sulfenylation Sites by Fusing Forests via Chou’s General PseAAC

(2018) Lidong Wang et al.   JOURNAL OF THEORETICAL BIOLOGY

iPPI-PseAAC(CGR): Identify protein-protein interactions by incorporating chaos game representation into PseAAC

(2018) Jianhua Jia et al.   JOURNAL OF THEORETICAL BIOLOGY

SPalmitoylC-PseAAC: A sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-palmitoylation sites in proteins

(2018) Waqar Hussain et al.   ANALYTICAL BIOCHEMISTRY

Prediction of N-linked glycosylation sites using position relative features and statistical moments

(2017) Muhammad Aizaz Akmal et al.   PLoS One

iSuc-PseOpt: Identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset

(2016) Jianhua Jia et al.   ANALYTICAL BIOCHEMISTRY

iPTM-mLys: identifying multiple lysine PTM sites and their different types

(2016) Wang-Ren Qiu et al.   BIOINFORMATICS

A Treatise to Computational Approaches Towards Prediction of Membrane Protein and Its Subtypes

(2016) Ahmad Hassan Butt et al.   JOURNAL OF MEMBRANE BIOLOGY

iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences

(2016) Wei Chen et al.   Oncotarget

Identification of protein-protein binding sites by incorporating the physicochemical properties and stationary wavelet transforms into pseudo amino acid composition

(2015) Jianhua Jia et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Impacts of Bioinformatics to Medicinal Chemistry

(2015) Kuo-Chen Chou   Medicinal Chemistry

iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into Pseudo Amino Acid Composition

(2014) Yan Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model

(2014) Wang-Ren Qiu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition

(2014) Yan Xu et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein–protein interaction mechanism

(2011) Guo-Ping Zhou   JOURNAL OF THEORETICAL BIOLOGY

An Allosteric Mechanism Inferred from Molecular Dynamics Simulations on Phospholamban Pentamer in Lipid Membranes

(2011) Peng Lian et al.   PLoS One

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

NetTurnP – Neural Network Prediction of Beta-turns by Use of Evolutionary Information and Predicted Protein Sequence Features

(2010) Bent Petersen et al.   PLoS One

Estimating Higher-Order Moments of Nonlinear Time Series

(2009) Alexander Gluhovsky et al.   Journal of Applied Meteorology and Climatology

Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws — New methods based on directed graphs

(2008) John Andraos   CANADIAN JOURNAL OF CHEMISTRY