Unbiased discovery of natural sequence variants that influence fungal virulence
Published 2023 View Full Article
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Title
Unbiased discovery of natural sequence variants that influence fungal virulence
Authors
Keywords
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Journal
Cell Host & Microbe
Volume -, Issue -, Pages -
Publisher
Elsevier BV
Online
2023-10-27
DOI
10.1016/j.chom.2023.10.002
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Note: Only part of the references are listed.- Lineages Derived from Cryptococcus neoformans Type Strain H99 Support a Link between the Capacity to Be Pleomorphic and Virulence
- (2022) Kenya E. Fernandes et al. mBio
- The global burden of HIV-associated cryptococcal infection in adults in 2020: a modelling analysis
- (2022) Radha Rajasingham et al. LANCET INFECTIOUS DISEASES
- Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome
- (2022) Poppy Sephton-Clark et al. mBio
- Pleiotropy and epistasis within and between signaling pathways defines the genetic architecture of fungal virulence
- (2021) Cullen Roth et al. PLoS Genetics
- The Transcription Factor Pdr802 Regulates Titan Cell Formation and Pathogenicity of Cryptococcus neoformans
- (2021) Julia C. V. Reuwsaat et al. mBio
- Uniparental nuclear inheritance following bisexual mating in fungi
- (2021) Vikas Yadav et al. eLife
- Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System
- (2021) Chen-Hsin Yu et al. mBio
- Short homology-directed repair using optimized Cas9 in the pathogen Cryptococcus neoformans enables rapid gene deletion and tagging
- (2021) Manning Y Huang et al. GENETICS
- The interplay of phenotype and genotype in Cryptococcus neoformans disease
- (2020) Sophie Altamirano et al. BIOSCIENCE REPORTS
- The mouse inhalation model of Cryptococcus neoformans infection recapitulates strain virulence in humans and shows closely related strains can possess differential virulence
- (2019) Liliane Mukaremera et al. INFECTION AND IMMUNITY
- Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans
- (2019) P. M. Ashton et al. Nature Communications
- Identification of Pathogen Genomic Differences That Impact Human Immune Response and Disease during Cryptococcus neoformans Infection
- (2019) Aleeza C. Gerstein et al. mBio
- The cAMP/Protein Kinase a Pathway Regulates Virulence and Adaptation to Host Conditions in Cryptococcus neoformans
- (2019) Mélissa Caza et al. Frontiers in Cellular and Infection Microbiology
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Multiple Applications of a Transient CRISPR-Cas9 Coupled with Electroporation (TRACE) System in theCryptococcus neoformansSpecies Complex
- (2018) Yumeng Fan et al. GENETICS
- Advances in Cryptococcus genomics: insights into the evolution of pathogenesis
- (2018) Christina A Cuomo et al. MEMORIAS DO INSTITUTO OSWALDO CRUZ
- Genotypic analysis of clinical and environmental Cryptococcus neoformans isolates from Brazil reveals the presence of VNB isolates and a correlation with biological factors
- (2018) Leonardo Euripedes Andrade-Silva et al. PLoS One
- Unintended Side Effects of Transformation Are Very Rare in Cryptococcus neoformans
- (2018) Ryan Friedman et al. G3-Genes Genomes Genetics
- QTLseqr: An R Package for Bulk Segregant Analysis with Next-Generation Sequencing
- (2018) Ben N. Mansfeld et al. Plant Genome
- Multiple Applications of a Transient CRISPR-Cas9 Coupled with Electroporation (TRACE) System in theCryptococcus neoformansSpecies Complex
- (2018) Yumeng Fan et al. GENETICS
- The Sec1/Munc18 (SM) protein Vps45 is involved in iron uptake, mitochondrial function and virulence in the pathogenic fungus Cryptococcus neoformans
- (2018) Mélissa Caza et al. PLoS Pathogens
- Phenotypic Variability Correlates with Clinical Outcome in Cryptococcus Isolates Obtained from Botswanan HIV/AIDS Patients
- (2018) Kenya E. Fernandes et al. mBio
- Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level
- (2017) Johanna Rhodes et al. GENETICS
- Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans
- (2017) Christopher A. Desjardins et al. GENOME RESEARCH
- Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii
- (2017) Yuan Chen et al. mBio
- Convergent microevolution of Cryptococcus neoformans hypervirulence in the laboratory and the clinic
- (2017) Samantha D. M. Arras et al. Scientific Reports
- Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in Vietnam
- (2017) Jeremy N. Day et al. PLoS Neglected Tropical Diseases
- Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level
- (2017) Johanna Rhodes et al. GENETICS
- Data-driven hypothesis weighting increases detection power in genome-scale multiple testing
- (2016) Nikolaos Ignatiadis et al. NATURE METHODS
- Systematic functional analysis of kinases in the fungal pathogen Cryptococcus neoformans
- (2016) Kyung-Tae Lee et al. Nature Communications
- Identification of QTLs Associated with Virulence Related Traits and Drug Resistance in Cryptococcus neoformans
- (2016) Aaron A. Vogan et al. G3-Genes Genomes Genetics
- Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation
- (2015) Ezekiel J. Maier et al. GENOME RESEARCH
- Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii
- (2015) Rhys A. Farrer et al. mBio
- Systematic functional profiling of transcription factor networks in Cryptococcus neoformans
- (2015) Kwang-Woo Jung et al. Nature Communications
- Genotypic Diversity Is Associated with Clinical Outcome and Phenotype in Cryptococcal Meningitis across Southern Africa
- (2015) Mathew A. Beale et al. PLoS Neglected Tropical Diseases
- Cryptococcus neoformans Dual GDP-Mannose Transporters and Their Role in Biology and Virulence
- (2014) Zhuo A. Wang et al. EUKARYOTIC CELL
- Efficient phagocytosis and laccase activity affect the outcome of HIV-associated cryptococcosis
- (2014) Wilber Sabiiti et al. JOURNAL OF CLINICAL INVESTIGATION
- The Cryptococcus neoformans Transcriptome at the Site of Human Meningitis
- (2014) Y. Chen et al. mBio
- Cryptococcus neoformans and Cryptococcus gattii, the Etiologic Agents of Cryptococcosis
- (2014) K. J. Kwon-Chung et al. Cold Spring Harbor Perspectives in Medicine
- Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation
- (2014) Guilhem Janbon et al. PLoS Genetics
- LUMPY: a probabilistic framework for structural variant discovery
- (2014) Ryan M Layer et al. GENOME BIOLOGY
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- NextGenMap: fast and accurate read mapping in highly polymorphic genomes
- (2013) Fritz J. Sedlazeck et al. BIOINFORMATICS
- Comparative Genomics of Serial Isolates of Cryptococcus neoformans Reveals Gene Associated With Carbon Utilization and Virulence
- (2013) Kate L. Ormerod et al. G3-Genes Genomes Genetics
- YAHA: fast and flexible long-read alignment with optimal breakpoint detection
- (2012) G. G. Faust et al. BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Cryptococcal Genotype Influences Immunologic Response and Human Clinical Outcome after Meningitis
- (2012) D. L. Wiesner et al. mBio
- Population Genetic Analyses Reveal the African Origin and Strain Variation of Cryptococcus neoformans var. grubii
- (2012) Anastasia P. Litvintseva et al. PLoS Pathogens
- CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing
- (2011) A. Abyzov et al. GENOME RESEARCH
- The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing
- (2011) Paul M. Magwene et al. PLoS Computational Biology
- Toward an Integrated Model of Capsule Regulation in Cryptococcus neoformans
- (2011) Brian C. Haynes et al. PLoS Pathogens
- Mitochondria and the regulation of hypervirulence in the fatal fungal outbreak on Vancouver Island
- (2010) Hansong Ma et al. Virulence
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Most Environmental Isolates of Cryptococcus neoformans var. grubii (Serotype A) Are Not Lethal for Mice
- (2009) A. P. Litvintseva et al. INFECTION AND IMMUNITY
- Systematic Genetic Analysis of Virulence in the Human Fungal Pathogen Cryptococcus neoformans
- (2008) Oliver W. Liu et al. CELL
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
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