Integrating disparate survey data in species distribution models demonstrate the need for robust model evaluation

Mapping nationally and globally at-risk species to identify hotspots for (and gaps in) conservation

(2023) Marie E. Hardouin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Integrating trawl and longline surveys across British Columbia improves groundfish distribution predictions

(2022) Patrick L. Thompson et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Addressing data integration challenges to link ecological processes across scales

(2021) Elise F Zipkin et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Bridging the gap between commercial fisheries and survey data to model the spatiotemporal dynamics of marine species

(2021) Marie‐Christine Rufener et al.   ECOLOGICAL APPLICATIONS

Estimating animal utilization distributions from multiple data types: A joint spatiotemporal point process framework

(2021) Joe Watson et al.   Annals of Applied Statistics

Matching expert range maps with species distribution model predictions

(2020) Kumar Mainali et al.   CONSERVATION BIOLOGY

Is more data always better? A simulation study of benefits and limitations of integrated distribution models

(2020) Emily G. Simmonds et al.   ECOGRAPHY

A standard protocol for reporting species distribution models

(2020) Damaris Zurell et al.   ECOGRAPHY

Non-stationary Gaussian models with physical barriers

(2019) Haakon Bakka et al.   Spatial Statistics

Standards for distribution models in biodiversity assessments

(2019) Miguel B. Araújo et al.   Science Advances

The recent past and promising future for data integration methods to estimate species’ distributions

(2019) David A. W. Miller et al.   Methods in Ecology and Evolution

Resolving misaligned spatial data with integrated species distribution models

(2019) Krishna Pacifici et al.   ECOLOGY

A practical guide for combining data to model species distributions

(2019) Robert J. Fletcher et al.   ECOLOGY

Developing spatio-temporal models using multiple data types for evaluating population trends and habitat usage

(2019) Arnaud Grüss et al.   ICES JOURNAL OF MARINE SCIENCE

Modelling the environmental niche space and distributions of cold-water corals and sponges in the Canadian northeast Pacific Ocean

(2019) Jackson W.F. Chu et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Data Integration for Large-Scale Models of Species Distributions

(2019) Nick J.B. Isaac et al.   TRENDS IN ECOLOGY & EVOLUTION

Predicting important rockfish (Sebastes spp.) habitat from large-scale longline surveys for southern British Columbia, Canada

(2018) Mauricio Carrasquilla-Henao et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Constructing Priors that Penalize the Complexity of Gaussian Random Fields

(2018) Geir-Arne Fuglstad et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

No-U-turn sampling for fast Bayesian inference in ADMB and TMB: Introducing the adnuts and tmbstan R packages

(2018) Cole C. Monnahan et al.   PLoS One

Monitoring programs of the U.S. Gulf of Mexico: inventory, development and use of a large monitoring database to map fish and invertebrate spatial distributions

(2018) Arnaud Grüss et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Testing the transferability of track-based habitat models for sound marine spatial planning

(2018) Clara Péron et al.   DIVERSITY AND DISTRIBUTIONS

Outstanding Challenges in the Transferability of Ecological Models

(2018) Katherine L. Yates et al.   TRENDS IN ECOLOGY & EVOLUTION

Combining multiple data sets to unravel the spatio-temporal dynamics of a data-limited fish stock.

(2018) Cecilia Pinto et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

block CV: An r package for generating spatially or environmentally separated folds for k -fold cross-validation of species distribution models

(2018) Roozbeh Valavi et al.   Methods in Ecology and Evolution

Incorporate Indigenous perspectives for impactful research and effective management

(2018) Natalie C. Ban et al.   Nature Ecology & Evolution

Producing distribution maps for informing ecosystem-based fisheries management using a comprehensive survey database and spatio-temporal models

(2017) Arnaud Grüss et al.   ICES JOURNAL OF MARINE SCIENCE

Habitat suitability modeling based on a spatiotemporal model: an example for cusk in the Gulf of Maine

(2017) Jocelyn Runnebaum et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Habitat suitability models for groundfish in the Gulf of Alaska

(2017) Jodi L. Pirtle et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Using individual tracking data to validate the predictions of species distribution models

(2016) Cecilia Pinto et al.   DIVERSITY AND DISTRIBUTIONS

Modelling of species distributions, range dynamics and communities under imperfect detection: advances, challenges and opportunities

(2016) Gurutzeta Guillera-Arroita   ECOGRAPHY

Fishery-dependent and -independent data lead to consistent estimations of essential habitats

(2016) Maria Grazia Pennino et al.   ICES JOURNAL OF MARINE SCIENCE

TMB: Automatic Differentiation and Laplace Approximation

(2016) Kasper Kristensen et al.   Journal of Statistical Software

Validation and improvement of species distribution models for structure-forming invertebrates in the eastern Bering Sea with an independent survey

(2016) CN Rooper et al.   MARINE ECOLOGY PROGRESS SERIES

Field validation of habitat suitability models for vulnerable marine ecosystems in the South Pacific Ocean: Implications for the use of broad-scale models in fisheries management

(2016) Owen F. Anderson et al.   OCEAN & COASTAL MANAGEMENT

Validation and improvement of species distribution models for structure-forming invertebrates in the eastern Bering Sea with an independent survey

(2016) CN Rooper et al.   MARINE ECOLOGY PROGRESS SERIES

Rapid recovery of Dungeness crab within spatial fishery closures declared under indigenous law in British Columbia

(2016) Alejandro Frid et al.   Global Ecology and Conservation

Is my species distribution model fit for purpose? Matching data and models to applications

(2015) Gurutzeta Guillera-Arroita et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

PresenceAbsence: AnRPackage for Presence Absence Analysis

(2015) Elizabeth A. Freeman et al.   Journal of Statistical Software

Accounting for imperfect detection and survey bias in statistical analysis of presence-only data

(2014) Robert M. Dorazio   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Combining multispecies home range and distribution models aids assessment of MPA effectiveness

(2014) D Abecasis et al.   MARINE ECOLOGY PROGRESS SERIES

Bias correction in species distribution models: pooling survey and collection data for multiple species

(2014) William Fithian et al.   Methods in Ecology and Evolution

Model-Based Control of Observer Bias for the Analysis of Presence-Only Data in Ecology

(2013) David I. Warton et al.   PLoS One

Cross-validation of species distribution models: removing spatial sorting bias and calibration with a null model

(2012) Robert J. Hijmans   ECOLOGY

The performance of range maps and species distribution models representing the geographic variation of species richness at different resolutions

(2012) Eduardo Pineda et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Salinity and thermal preference of Dungeness crabs in the lab and in the field: Effects of food availability and starvation

(2012) Daniel L. Curtis et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Assessing transferability of ecological models: an underappreciated aspect of statistical validation

(2012) Seth J. Wenger et al.   Methods in Ecology and Evolution

An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach

(2011) Finn Lindgren et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Accounting for uncertainty when mapping species distributions: The need for maps of ignorance

(2011) Duccio Rocchini et al.   PROGRESS IN PHYSICAL GEOGRAPHY

Predicting species distributions from checklist data using site-occupancy models

(2010) Marc Kéry et al.   JOURNAL OF BIOGEOGRAPHY

Claw Morphology and Feeding Rates of Introduced European Green Crabs (Carcinus maenasL, 1758) and Native Dungeness Crabs (Cancer magisterDana, 1852)

(2010) Sylvia Behrens Yamada et al.   JOURNAL OF SHELLFISH RESEARCH

The art of modelling range-shifting species

(2010) Jane Elith et al.   Methods in Ecology and Evolution

Coefficients of Determination in Logistic Regression Models—A New Proposal: The Coefficient of Discrimination

(2009) Tue Tjur   AMERICAN STATISTICIAN

Effects of sample size on the performance of species distribution models

(2008) M. S. Wisz et al.   DIVERSITY AND DISTRIBUTIONS

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

A comparison of the performance of threshold criteria for binary classification in terms of predicted prevalence and kappa

(2008) Elizabeth A. Freeman et al.   ECOLOGICAL MODELLING

A year in the life of a Dungeness crab: methodology for determining microhabitat conditions experienced by large decapod crustaceans in estuaries

(2008) D. L. Curtis et al.   JOURNAL OF ZOOLOGY