The recent past and promising future for data integration methods to estimate species’ distributions

Synthesizing multiple data types for biological conservation using integrated population models

(2018) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION

Optimal treatment allocations in space and time for on-line control of an emerging infectious disease

(2018) Eric B. Laber et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS

Integrating auxiliary data in optimal spatial design for species distribution modelling

(2018) Brian J. Reich et al.   Methods in Ecology and Evolution

Accounting for misidentification and heterogeneity in occupancy studies using hidden Markov models

(2018) Julie Louvrier et al.   ECOLOGICAL MODELLING

Quantifying climate sensitivity and climate-driven change in North American amphibian communities

(2018) David A. W. Miller et al.   Nature Communications

Range position and climate sensitivity: The structure of among-population demographic responses to climatic variation

(2017) Staci M. Amburgey et al.   GLOBAL CHANGE BIOLOGY

Ruffed grouse population declines after introduction of West Nile virus

(2017) Glenn E. Stauffer et al.   JOURNAL OF WILDLIFE MANAGEMENT

Data integration for inference about spatial processes: A model-based approach to test and account for data inconsistency

(2017) Simone Tenan et al.   PLoS One

Integrated population modeling to assess demographic variation and contributions to population growth for endangered whooping cranes

(2016) Scott Wilson et al.   BIOLOGICAL CONSERVATION

A two-species occupancy model accommodating simultaneous spatial and interspecific dependence

(2016) Christopher T. Rota et al.   ECOLOGY

Dynamic N -occupancy models: estimating demographic rates and local abundance from detection-nondetection data

(2016) Sam Rossman et al.   ECOLOGY

Integrating occurrence data and expert maps for improved species range predictions

(2016) Cory Merow et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Large-scale recovery of an endangered amphibian despite ongoing exposure to multiple stressors

(2016) Roland A. Knapp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Designing occupancy studies when false-positive detections occur

(2016) Matthew J. Clement   Methods in Ecology and Evolution

Uncertainty in biological monitoring: a framework for data collection and analysis to account for multiple sources of sampling bias

(2016) Viviana Ruiz-Gutierrez et al.   Methods in Ecology and Evolution

Improved state-space models for inference about spatial and temporal variation in abundance from count data

(2015) Jeffrey A. Hostetler et al.   ECOLOGY

Modeling false positive detections in species occurrence data under different study designs

(2015) Thierry Chambert et al.   ECOLOGY

Is my species distribution model fit for purpose? Matching data and models to applications

(2015) Gurutzeta Guillera-Arroita et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Integrated models that unite local and regional data reveal larger-scale environmental relationships and improve predictions of species distributions

(2015) Robert J. Fletcher et al.   LANDSCAPE ECOLOGY

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Performance of species occurrence estimators when basic assumptions are not met: a test using field data where true occupancy status is known

(2015) David A. W. Miller et al.   Methods in Ecology and Evolution

Occupancy estimation for rare species using a spatially-adaptive sampling design

(2015) Krishna Pacifici et al.   Methods in Ecology and Evolution

On the existence of maximum likelihood estimates for presence-only data

(2015) Trevor J. Hefley et al.   Methods in Ecology and Evolution

Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models

(2015) Otso Ovaskainen et al.   Methods in Ecology and Evolution

Point process models for presence-only analysis

(2015) Ian W. Renner et al.   Methods in Ecology and Evolution

Accounting for imperfect detection and survey bias in statistical analysis of presence-only data

(2014) Robert M. Dorazio   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Two-Stage Bayesian Study Design for Species Occupancy Estimation

(2014) Gurutzeta Guillera-Arroita et al.   JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS

Improving abundance estimation by combining capture-recapture and occupancy data: example with a large carnivore

(2014) Laetitia Blanc et al.   JOURNAL OF APPLIED ECOLOGY

Optimizing study design for multi-species avian monitoring programmes

(2014) Jamie S. Sanderlin et al.   JOURNAL OF APPLIED ECOLOGY

Using species distribution models to optimize vector control in the framework of the tsetse eradication campaign in Senegal

(2014) A. H. Dicko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian hierarchical models for spatially misaligned data in R

(2014) Andrew O. Finley et al.   Methods in Ecology and Evolution

Understanding co-occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)

(2014) Laura J. Pollock et al.   Methods in Ecology and Evolution

Bias correction in species distribution models: pooling survey and collection data for multiple species

(2014) William Fithian et al.   Methods in Ecology and Evolution

An integrated modeling approach to estimating Gunnison sage-grouse population dynamics: combining index and demographic data

(2014) Amy J. Davis et al.   Ecology and Evolution

Finite-sample equivalence in statistical models for presence-only data

(2013) William Fithian et al.   Annals of Applied Statistics

Combining camera-trapping and noninvasive genetic data in a spatial capture–recapture framework improves density estimates for the jaguar

(2013) Rahel Sollmann et al.   BIOLOGICAL CONSERVATION

Statistical solutions for error and bias in global citizen science datasets

(2013) Tomas J. Bird et al.   BIOLOGICAL CONSERVATION

Equivalence of MAXENT and Poisson Point Process Models for Species Distribution Modeling in Ecology

(2013) Ian W. Renner et al.   BIOMETRICS

Inference from presence-only data; the ongoing controversy

(2013) Trevor Hastie et al.   ECOGRAPHY

More than the sum of the parts: forest climate response from joint species distribution models

(2013) James S. Clark et al.   ECOLOGICAL APPLICATIONS

On estimating probability of presence from use–availability or presence–background data

(2013) Steven J. Phillips et al.   ECOLOGY

Modeling structured population dynamics using data from unmarked individuals

(2013) Elise F. Zipkin et al.   ECOLOGY

The roles of competition and habitat in the dynamics of populations and species distributions

(2013) Charles B. Yackulic et al.   ECOLOGY

Predicting species distributions for conservation decisions

(2013) Antoine Guisan et al.   ECOLOGY LETTERS

Determining Occurrence Dynamics when False Positives Occur: Estimating the Range Dynamics of Wolves from Public Survey Data

(2013) David A. W. Miller et al.   PLoS One

Model-Based Control of Observer Bias for the Analysis of Presence-Only Data in Ecology

(2013) David I. Warton et al.   PLoS One

Detecting diversity: emerging methods to estimate species diversity

(2013) Kelly J. Iknayan et al.   TRENDS IN ECOLOGY & EVOLUTION

Integrating resource selection information with spatial capture-recapture

(2013) J. Andrew Royle et al.   Methods in Ecology and Evolution

Spatially explicit integrated population models

(2013) Richard B. Chandler et al.   Methods in Ecology and Evolution

Predicting the Geographic Distribution of a Species from Presence-Only Data Subject to Detection Errors

(2012) Robert M. Dorazio   BIOMETRICS

Estimating the strength of density dependence in the presence of observation errors using integrated population models

(2012) Fitsum Abadi et al.   ECOLOGICAL MODELLING

Density estimation in tiger populations: combining information for strong inference

(2012) Arjun M. Gopalaswamy et al.   ECOLOGY

Spatial occupancy models for large data sets

(2012) Devin S. Johnson et al.   ECOLOGY

A spatial mark–resight model augmented with telemetry data

(2012) Rahel Sollmann et al.   ECOLOGY

Joint estimation of habitat dynamics and species interactions: disturbance reduces co-occurrence of non-native predators with an endangered toad

(2012) David A. W. Miller et al.   JOURNAL OF ANIMAL ECOLOGY

Dealing with detection error in site occupancy surveys: what can we do with a single survey?

(2012) S. R. Lele et al.   Journal of Plant Ecology

Likelihood analysis of species occurrence probability from presence-only data for modelling species distributions

(2012) J. Andrew Royle et al.   Methods in Ecology and Evolution

A two-phase sampling design for increasing detections of rare species in occupancy surveys

(2012) Krishna Pacifici et al.   Methods in Ecology and Evolution

Presence-only modelling using MAXENT: when can we trust the inferences?

(2012) Charles B. Yackulic et al.   Methods in Ecology and Evolution

Data weighting in statistical fisheries stock assessment models

(2011) R.I.C. Chris Francis   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Improving occupancy estimation when two types of observational error occur: non-detection and species misidentification

(2011) David A. Miller et al.   ECOLOGY

Cost-efficient selection of a marker panel in genetic studies

(2011) Jamie S. Sanderlin et al.   JOURNAL OF WILDLIFE MANAGEMENT

Community structure and diversity of tropical forest mammals: data from a global camera trap network

(2011) J. A. Ahumada et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Data-intensive science applied to broad-scale citizen science

(2011) Wesley M. Hochachka et al.   TRENDS IN ECOLOGY & EVOLUTION

Poisson point process models solve the “pseudo-absence problem” for presence-only data in ecology

(2010) David I. Warton et al.   Annals of Applied Statistics

Models for Estimating Abundance from Repeated Counts of an Open Metapopulation

(2010) D. Dail et al.   BIOMETRICS

Reconciling multiple data sources to improve accuracy of large-scale prediction of forest disease incidence

(2010) Ephraim M. Hanks et al.   ECOLOGICAL APPLICATIONS

Applications and limitations of museum data for conservation and ecology, with particular attention to species distribution models

(2010) Tim Newbold   PROGRESS IN PHYSICAL GEOGRAPHY

Design of occupancy studies with imperfect detection

(2010) Gurutzeta Guillera-Arroita et al.   Methods in Ecology and Evolution

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

eBird: A citizen-based bird observation network in the biological sciences

(2009) Brian L. Sullivan et al.   BIOLOGICAL CONSERVATION

Detecting range shifts from historical species occurrences: new perspectives on old data

(2009) Morgan W. Tingley et al.   TRENDS IN ECOLOGY & EVOLUTION

Analyzing Complex Capture-Recapture Data in the Presence of Individual and Temporal Covariates and Model Uncertainty

(2008) R. King et al.   BIOMETRICS

Presence-Only Data and the EM Algorithm

(2008) Gill Ward et al.   BIOMETRICS

Multi-scale occupancy estimation and modelling using multiple detection methods

(2008) James D. Nichols et al.   JOURNAL OF APPLIED ECOLOGY