A standard protocol for reporting species distribution models

Standards for distribution models in biodiversity assessments

(2019) Miguel B. Araújo et al.   Science Advances

kuenm: an R package for detailed development of ecological niche models using Maxent

(2019) Marlon E. Cobos et al.   PeerJ

Uncertainty in ensembles of global biodiversity scenarios

(2019) Wilfried Thuiller et al.   Nature Communications

A review of evidence about use and performance of species distribution modelling ensembles like BIOMOD

(2019) Tianxiao Hao et al.   DIVERSITY AND DISTRIBUTIONS

A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels

(2019) Anna Norberg et al.   ECOLOGICAL MONOGRAPHS

Forecasting species range dynamics with process‐explicit models: matching methods to applications

(2019) Natalie J. Briscoe et al.   ECOLOGY LETTERS

Macroecology in the age of Big Data – Where to go from here?

(2019) Rafael O. Wüest et al.   JOURNAL OF BIOGEOGRAPHY

Testing species assemblage predictions from stacked and joint species distribution models

(2019) Damaris Zurell et al.   JOURNAL OF BIOGEOGRAPHY

Species' range model metadata standards: RMMS

(2019) Cory Merow et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

A checklist for maximizing reproducibility of ecological niche models

(2019) Xiao Feng et al.   Nature Ecology & Evolution

Model averaging in ecology: a review of Bayesian, information-theoretic, and tactical approaches for predictive inference

(2018) Carsten F. Dormann et al.   ECOLOGICAL MONOGRAPHS

Modeling the ecology and evolution of biodiversity: Biogeographical cradles, museums, and graves

(2018) Thiago F. Rangel et al.   SCIENCE

Optimizing ensembles of small models for predicting the distribution of species with few occurrences

(2018) Frank T. Breiner et al.   Methods in Ecology and Evolution

Transferring biodiversity models for conservation: Opportunities and challenges

(2018) Ana M. M. Sequeira et al.   Methods in Ecology and Evolution

How to best threshold and validate stacked species assemblages? Community optimisation might hold the answer

(2018) Daniel Scherrer et al.   Methods in Ecology and Evolution

Wallace : A flexible platform for reproducible modeling of species niches and distributions built for community expansion

(2018) Jamie M. Kass et al.   Methods in Ecology and Evolution

Best practices for reporting climate data in ecology

(2018) Naia Morueta-Holme et al.   Nature Climate Change

Reproducibility vs. Replicability: A Brief History of a Confused Terminology

(2018) Hans E. Plesser   Frontiers in Neuroinformatics

An evaluation of transferability of ecological niche models

(2018) Huijie Qiao et al.   ECOGRAPHY

Outstanding Challenges in the Transferability of Ecological Models

(2018) Katherine L. Yates et al.   TRENDS IN ECOLOGY & EVOLUTION

Strengthening the contribution of macroecological models to conservation practice

(2018) Giovanni Rapacciuolo   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Changes in human footprint drive changes in species extinction risk

(2018) Moreno Di Marco et al.   Nature Communications

block CV: An r package for generating spatially or environmentally separated folds for k -fold cross-validation of species distribution models

(2018) Roozbeh Valavi et al.   Methods in Ecology and Evolution

Long-distance migratory birds threatened by multiple independent risks from global change

(2018) Damaris Zurell et al.   Nature Climate Change

Implications and alternatives of assigning climate data to geographical centroids

(2017) Daniel S. Park et al.   JOURNAL OF BIOGEOGRAPHY

Widespread sampling biases in herbaria revealed from large-scale digitization

(2017) Barnabas H. Daru et al.   NEW PHYTOLOGIST

Integrating correlation between traits improves spatial predictions of plant functional composition

(2017) Rafael O. Wüest et al.   OIKOS

A global dataset of crowdsourced land cover and land use reference data

(2017) Steffen Fritz et al.   Scientific Data

Climatologies at high resolution for the earth’s land surface areas

(2017) Dirk Nikolaus Karger et al.   Scientific Data

Geographic potential of disease caused by Ebola and Marburg viruses in Africa

(2016) A. Townsend Peterson et al.   ACTA TROPICA

Modelling of species distributions, range dynamics and communities under imperfect detection: advances, challenges and opportunities

(2016) Gurutzeta Guillera-Arroita   ECOGRAPHY

sdm: a reproducible and extensible R platform for species distribution modelling

(2016) Babak Naimi et al.   ECOGRAPHY

Multidimensional biases, gaps and uncertainties in global plant occurrence information

(2016) Carsten Meyer et al.   ECOLOGY LETTERS

Benchmarking novel approaches for modelling species range dynamics

(2016) Damaris Zurell et al.   GLOBAL CHANGE BIOLOGY

Big data for forecasting the impacts of global change on plant communities

(2016) Janet Franklin et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

What we use is not what we know: environmental predictors in plant distribution models

(2016) Heidi K. Mod et al.   JOURNAL OF VEGETATION SCIENCE

What does research reproducibility mean?

(2016) Steven N. Goodman et al.   Science Translational Medicine

Sixteen years of change in the global terrestrial human footprint and implications for biodiversity conservation

(2016) Oscar Venter et al.   Nature Communications

Spatial predictions at the community level: from current approaches to future frameworks

(2015) Manuela D'Amen et al.   BIOLOGICAL REVIEWS

Characteristics of the top-cited papers in species distribution predictive models

(2015) Fabiana G. Barbosa et al.   ECOLOGICAL MODELLING

Predicting changes in the distribution and abundance of species under environmental change

(2015) Johan Ehrlén et al.   ECOLOGY LETTERS

Is my species distribution model fit for purpose? Matching data and models to applications

(2015) Gurutzeta Guillera-Arroita et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Overcoming limitations of modelling rare species by using ensembles of small models

(2015) Frank T. Breiner et al.   Methods in Ecology and Evolution

Point process models for presence-only analysis

(2015) Ian W. Renner et al.   Methods in Ecology and Evolution

Drifting baited stereo-videography: a novel sampling tool for surveying pelagic wildlife in offshore marine reserves

(2015) P. J. Bouchet et al.   Ecosphere

Here be dragons: a tool for quantifying novelty due to covariate range and correlation change when projecting species distribution models

(2014) Mohsen B. Mesgaran et al.   DIVERSITY AND DISTRIBUTIONS

What do we gain from simplicity versus complexity in species distribution models?

(2014) Cory Merow et al.   ECOGRAPHY

Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE

(2014) Volker Grimm et al.   ECOLOGICAL MODELLING

Bringing an ecological view of change to Landsat-based remote sensing

(2014) Robert E Kennedy et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Modelling range dynamics under global change: which framework and why?

(2014) Miguel Lurgi et al.   Methods in Ecology and Evolution

ENMeval: An R package for conducting spatially independent evaluations and estimating optimal model complexity forMaxentecological niche models

(2014) Robert Muscarella et al.   Methods in Ecology and Evolution

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

Applications of step-selection functions in ecology and conservation

(2014) Henrik Thurfjell et al.   Movement Ecology

Climate and socio-economic scenarios for climate change research and assessment: reconciling the new with the old

(2013) Detlef P. van Vuuren et al.   CLIMATIC CHANGE

The importance of correcting for sampling bias in MaxEnt species distribution models

(2013) Stephanie Kramer-Schadt et al.   DIVERSITY AND DISTRIBUTIONS

A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter

(2013) Cory Merow et al.   ECOGRAPHY

Predicting species distributions for conservation decisions

(2013) Antoine Guisan et al.   ECOLOGY LETTERS

Imperfect detection impacts the performance of species distribution models

(2013) José J. Lahoz-Monfort et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Analysing and mapping species range dynamics using occupancy models

(2013) Marc Kéry et al.   JOURNAL OF BIOGEOGRAPHY

Modelling species distributions with remote sensing data: bridging disciplinary perspectives

(2013) Anna F. Cord et al.   JOURNAL OF BIOGEOGRAPHY

Selecting thresholds for the prediction of species occurrence with presence-only data

(2013) Canran Liu et al.   JOURNAL OF BIOGEOGRAPHY

Prevalence, thresholds and the performance of presence-absence models

(2013) Callum R. Lawson et al.   Methods in Ecology and Evolution

Predicting to new environments: tools for visualizing model behaviour and impacts on mapped distributions

(2012) Damaris Zurell et al.   DIVERSITY AND DISTRIBUTIONS

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

Integrating fundamental concepts of ecology, biogeography, and sampling into effective ecological niche modeling and species distribution modeling

(2012) A. T. Peterson et al.   PLANT BIOSYSTEMS

Darwin Core: An Evolving Community-Developed Biodiversity Data Standard

(2012) John Wieczorek et al.   PLoS One

Predicting the Fate of Biodiversity Using Species’ Distribution Models: Enhancing Model Comparability and Repeatability

(2012) Genoveva Rodríguez-Castañeda et al.   PLoS One

Climatic Associations of British Species Distributions Show Good Transferability in Time but Low Predictive Accuracy for Range Change

(2012) Giovanni Rapacciuolo et al.   PLoS One

Selecting pseudo-absences for species distribution models: how, where and how many?

(2012) Morgane Barbet-Massin et al.   Methods in Ecology and Evolution

Towards the modelling of true species distributions

(2011) Marc Kéry   JOURNAL OF BIOGEOGRAPHY

Incorporating uncertainty in predictive species distribution modelling

(2011) C. M. Beale et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Accounting for uncertainty when mapping species distributions: The need for maps of ignorance

(2011) Duccio Rocchini et al.   PROGRESS IN PHYSICAL GEOGRAPHY

Reproducible Research in Computational Science

(2011) R. D. Peng   SCIENCE

Integrating biodiversity distribution knowledge: toward a global map of life

(2011) Walter Jetz et al.   TRENDS IN ECOLOGY & EVOLUTION

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

The ODD protocol: A review and first update

(2010) Volker Grimm et al.   ECOLOGICAL MODELLING

POC plots: calibrating species distribution models with presence-only data

(2010) Steven J. Phillips et al.   ECOLOGY

Accessible Reproducible Research

(2010) J. P. Mesirov   SCIENCE

Ecological models supporting environmental decision making: a strategy for the future

(2010) Amelie Schmolke et al.   TRENDS IN ECOLOGY & EVOLUTION

The art of modelling range-shifting species

(2010) Jane Elith et al.   Methods in Ecology and Evolution

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

The projection of species distribution models and the problem of non-analog climate

(2009) Matthew C. Fitzpatrick et al.   BIODIVERSITY AND CONSERVATION

BIOMOD - a platform for ensemble forecasting of species distributions

(2009) Wilfried Thuiller et al.   ECOGRAPHY

Sample selection bias and presence-only distribution models: implications for background and pseudo-absence data

(2009) Steven J. Phillips et al.   ECOLOGICAL APPLICATIONS

COMPONENTS OF UNCERTAINTY IN SPECIES DISTRIBUTION ANALYSIS: A CASE STUDY OF THE GREAT GREY SHRIKE

(2008) Carsten F. Dormann et al.   ECOLOGY

A working guide to boosted regression trees

(2008) J. Elith et al.   JOURNAL OF ANIMAL ECOLOGY