LncRNA–protein interaction prediction with reweighted feature selection

LPLSG: Prediction of lncRNA-protein Interaction Based on Local Network Structure

(2023) Wei Wang et al.   Current Bioinformatics

Predicting lncRNA-protein interactions with bipartite graph embedding and deep graph neural networks

(2023) Yuzhou Ma et al.   Frontiers in Genetics

DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms

(2021) Dipan Shaw et al.   BMC BIOINFORMATICS

Protein functional module identification method combining topological features and gene expression data

(2021) Zihao Zhao et al.   BMC GENOMICS

LPI-HyADBS: a hybrid framework for lncRNA-protein interaction prediction integrating feature selection and classification

(2021) Liqian Zhou et al.   BMC BIOINFORMATICS

Feature selection methods on gene expression microarray data for cancer classification: A systematic review

(2021) Esra'a Alhenawi et al.   COMPUTERS IN BIOLOGY AND MEDICINE

LPI-SKF: Predicting lncRNA-Protein Interactions Using Similarity Kernel Fusions

(2020) Yuan-Ke Zhou et al.   Frontiers in Genetics

PlncRNADB: a repository of plant lncRNAs and lncRNA-RBP protein interactions

(2019) Youhuang Bai et al.   Current Bioinformatics

PyFeat: A Python-based Effective Feature Generation Tool for DNA, RNA, and Protein Sequences

(2019) Rafsanjani Muhammod et al.   BIOINFORMATICS

Inflated performance measures in enhancer–promoter interaction-prediction methods

(2019) Fan Cao et al.   NATURE GENETICS

Reply to ‘Inflated performance measures in enhancer–promoter interaction-prediction methods’

(2019) Sean Whalen et al.   NATURE GENETICS

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver

(2018) Arun Prasad Pandurangan et al.   NUCLEIC ACIDS RESEARCH

SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions

(2018) Wen Zhang et al.   PLoS Computational Biology

LPI-ETSLP: lncRNA–protein interaction prediction using eigenvalue transformation-based semi-supervised link prediction

(2017) Huan Hu et al.   Molecular BioSystems

LPI-NRLMF: lncRNA-protein interaction prediction by neighborhood regularized logistic matrix factorization

(2017) Hongsheng Liu et al.   Oncotarget

Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin

(2016) Sean Whalen et al.   NATURE GENETICS

Computational approaches towards understanding human long non-coding RNA biology

(2015) Saakshi Jalali et al.   BIOINFORMATICS

Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model

(2015) Ao Li et al.   Biomed Research International

Computational prediction of associations between long non-coding RNAs and proteins

(2013) Qiongshi Lu et al.   BMC GENOMICS

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

NONCODEv4: exploring the world of long non-coding RNA genes

(2013) Chaoyong Xie et al.   NUCLEIC ACIDS RESEARCH

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

The genomic binding sites of a noncoding RNA

(2011) M. D. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA