Predicting lncRNA-protein interactions with bipartite graph embedding and deep graph neural networks

Predicting lncRNA–Protein Interactions by Heterogenous Network Embedding

(2022) Guoqing Zhao et al.   Frontiers in Genetics

NPI-GNN: Predicting ncRNA–protein interactions with deep graph neural networks

(2021) Zi-Ang Shen et al.   BRIEFINGS IN BIOINFORMATICS

LPI-deepGBDT: a multiple-layer deep framework based on gradient boosting decision trees for lncRNA–protein interaction identification

(2021) Liqian Zhou et al.   BMC BIOINFORMATICS

miR-106b-5p contributes to the lung metastasis of breast cancer via targeting CNN1 and regulating Rho/ROCK1 pathway

(2020) Zheng Wang et al.   Aging-US

ZNRD1-AS1 Promotes Nasopharyngeal Carcinoma Cell Invasion and Metastasis by Regulating the miR-335–ROCK1 Axis

(2020) Qiang Wang et al.   OncoTargets and Therapy

LINC00337 promotes tumor angiogenesis in colorectal cancer by recruiting DNMT1, which suppresses the expression of CNN1

(2020) Xiangming Xu et al.   CANCER GENE THERAPY

Learning Vertex Representations for Bipartite Networks

(2020) Ming Gao et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

A Comprehensive Survey of Graph Embedding: Problems, Techniques and Applications

(2018) HongYun Cai et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

A Survey on Network Embedding

(2018) Peng Cui et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

The linear neighborhood propagation method for predicting long non-coding RNA–protein interactions

(2018) Wen Zhang et al.   NEUROCOMPUTING

ELLPMDA: Ensemble learning and link prediction for miRNA-disease association prediction

(2018) Xing Chen et al.   RNA Biology

Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph

(2018) Zhi-An Huang et al.   BMC Medical Genomics

BiRank: Towards Ranking on Bipartite Graphs

(2017) Xiangnan He et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Recommendations for Management of Clinically Significant Drug-Drug Interactions With Statins and Select Agents Used in Patients With Cardiovascular Disease: A Scientific Statement From the American Heart Association

(2016) Barbara S. Wiggins et al.   CIRCULATION

NPInter v3.0: an upgraded database of noncoding RNA-associated interactions

(2016) Yajing Hao et al.   Database-The Journal of Biological Databases and Curation

A Bipartite Network-based Method for Prediction of Long Non-coding RNA–protein Interactions

(2016) Mengqu Ge et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model

(2015) Ao Li et al.   Biomed Research International

LncRNA: A link between RNA and cancer

(2014) Guodong Yang et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation of FAS Exon Definition and Apoptosis by the Ewing Sarcoma Protein

(2014) Maria Paola Paronetto et al.   Cell Reports

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Emerging epigenetic mechanisms of long non-coding RNAs

(2013) K. Schaukowitch et al.   NEUROSCIENCE

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

NONCODE v3.0: integrative annotation of long noncoding RNAs

(2011) D. Bu et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

PRIDB: a protein-RNA interface database

(2010) B. A. Lewis et al.   NUCLEIC ACIDS RESEARCH

The Graph Neural Network Model

(2008) F. Scarselli et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

AdaBoost with SVM-based component classifiers

(2007) Xuchun Li et al.   ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE