Targeted regulation of the microbiome by green manuring to promote tobacco growth

Repeated litter inputs promoted stable soil organic carbon formation by increasing fungal dominance and carbon use efficiency

(2022) Yuqi Wei et al.   BIOLOGY AND FERTILITY OF SOILS

When Do Cover Crops Reduce Nitrate Leaching? A Global Meta‐Analysis

(2022) Amin Nouri et al.   GLOBAL CHANGE BIOLOGY

Improved ginseng production under continuous cropping through soil health reinforcement and rhizosphere microbial manipulation with biochar: a field study of Panax ginseng from Northeast China

(2022) Cheng Liu et al.   Horticulture Research

Comparative analysis of the endophytic bacteria inhabiting the phyllosphere of aquatic fern Azolla species by high-throughput sequencing

(2022) Yan-Qiu Yang et al.   BMC MICROBIOLOGY

Differences in Soil Microbial Community Composition Between Suppressive and Root Rot-Conducive in Tobacco Fields

(2021) Yaru Ding et al.   CURRENT MICROBIOLOGY

Nutrient improvement and soil acidification inducing contrary effects on bacterial community structure following application of hairy vetch (Vicia villosa Roth L.) in Ultisol

(2021) Xingjia Xiang et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Bacterial communities in paddy soils changed by milk vetch as green manure: A study conducted across six provinces in South China

(2021) Songjuan GAO et al.   PEDOSPHERE

Does the ratio of β-1,4-glucosidase to β-1,4-N-acetylglucosaminidase indicate the relative resource allocation of soil microbes to C and N acquisition?

(2021) Taiki Mori et al.   SOIL BIOLOGY & BIOCHEMISTRY

Decomposing cover crops modify root-associated microbiome composition and disease tolerance of cash crop seedlings

(2021) Xiaojiao Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root exudates impact plant performance under abiotic stress

(2021) Yen Ning Chai et al.   TRENDS IN PLANT SCIENCE

Roles of soil bacteria and fungi in controlling the availability of nitrogen from cover crop residues during the microbial hot moments

(2021) Yufita Dwi Chinta et al.   APPLIED SOIL ECOLOGY

Leguminous green manure enhances the soil organic nitrogen pool of cropland via disproportionate increase of nitrogen in particulate organic matter fractions

(2021) Zhiyuan Yao et al.   CATENA

Optimizing cover crop and fertilizer timing for high maize yield and nitrogen cycle control

(2021) Letusa Momesso et al.   GEODERMA

Competition for iron drives phytopathogen control by natural rhizosphere microbiomes

(2020) Shaohua Gu et al.   Nature Microbiology

Cover crop and cereal straw management influence the residual nitrogen effect

(2020) Doline Fontaine et al.   EUROPEAN JOURNAL OF AGRONOMY

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

(2020) Daliang Ning et al.   Nature Communications

Using milk vetch (Astragalus sinicus L.) to promote rice straw decomposition by regulating enzyme activity and bacterial community

(2020) Guopeng Zhou et al.   BIORESOURCE TECHNOLOGY

Cover cropping enhances soil microbial biomass and affects microbial community structure: A meta-analysis

(2020) Ihsan Muhammad et al.   GEODERMA

Scavenging and recycling deep soil nitrogen using cover crops on mid-Atlantic, USA farms

(2020) Sarah M. Hirsh et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

(2019) Shuo Jiao et al.   Microbiome

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Cover crop rotation effects on growth and development, seedling disease and yield of corn and soybean

(2019) Jyotsna Acharya et al.   PLANT DISEASE

Co-incorporation of green manure and rice straw improves rice production, soil chemical, biochemical and microbiological properties in a typical paddy field in southern China

(2019) Guopeng Zhou et al.   SOIL & TILLAGE RESEARCH

Ammonia-oxidizing archaea are more sensitive than ammonia-oxidizing bacteria to long-term application of green manure in red paddy soil

(2018) Songjuan Gao et al.   APPLIED SOIL ECOLOGY

Crucifer-legume cover crop mixtures provide effective sulphate catch crop and sulphur green manure services

(2018) Antoine Couëdel et al.   PLANT AND SOIL

Ecoenzymatic stoichiometry and microbial nutrient limitation in rhizosphere soil in the arid area of the northern Loess Plateau, China

(2018) Yongxing Cui et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Characterization of microbial community response to cover crop residue decomposition

(2018) Clayton J. Nevins et al.   SOIL BIOLOGY & BIOCHEMISTRY

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Scaling-up: cover crops differentially influence soil carbon in agricultural fields with diverse topography

(2016) Moslem Ladoni et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Nitrogen Release Dynamics and Decomposition of Buried and Surface Cover Crop Residues

(2016) E. Jahanzad et al.   AGRONOMY JOURNAL

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Potential for Cereal Rye Cover Crops to Host Corn Seedling Pathogens

(2016) Matthew G. Bakker et al.   PHYTOPATHOLOGY

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic approaches for studying diversification

(2014) Hélène Morlon   ECOLOGY LETTERS

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Assessing the relative importance of neutral stochasticity in ecological communities

(2014) Mark Vellend et al.   OIKOS

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

Bacterial chitin degradation—mechanisms and ecophysiological strategies

(2013) Sara Beier et al.   Frontiers in Microbiology

Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates

(2013) John E. Hobbie et al.   Frontiers in Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Substrate concentration and enzyme allocation can affect rates of microbial decomposition

(2011) Donovan P. German et al.   ECOLOGY

N-Acetyl Glucosamine Obtained from Chitin by Chitin Degrading Factors in Chitinbacter tainanesis

(2011) Jeen-Kuan Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Decomposition, nitrogen and phosphorus mineralization from winter-grown cover crop residues and suitability for a smallholder farming system in South Africa

(2010) F. S. Murungu et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

The effects of substrate composition, quantity, and diversity on microbial activity

(2010) Daniel L. Hernández et al.   PLANT AND SOIL

Soil organic nitrogen mineralization across a global latitudinal gradient

(2009) D. L. Jones et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Stress tolerance in plants via habitat-adapted symbiosis

(2008) Rusty J Rodriguez et al.   ISME Journal

More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis

(2008) R. Rodriguez et al.   JOURNAL OF EXPERIMENTAL BOTANY