Integrating seed microbiome knowledge into restoration and ex situ conservation of native Australian plants

Microbial seed coating: An attractive tool for sustainable agriculture

(2023) Arezoo Paravar et al.   Biotechnology Reports

Seed microbiota revealed by a large‐scale meta‐analysis including 50 plant species

(2022) Marie Simonin et al.   NEW PHYTOLOGIST

Epichloë Endophyte-Promoted Seed Pathogen Increases Host Grass Resistance Against Insect Herbivory

(2022) Miika Laihonen et al.   Frontiers in Microbiology

Fungal Seed Endophyte FZT214 Improves Dysphania ambrosioides Cd Tolerance Throughout Different Developmental Stages

(2022) Shobhika Parmar et al.   Frontiers in Microbiology

Exploring Potential of Seed Endophytic Bacteria for Enhancing Drought Stress Resilience in Maize (Zea mays L.)

(2022) Sulman Siddique et al.   Sustainability

Seed Treatments with Microorganisms Can Have a Biostimulant Effect by Influencing Germination and Seedling Growth of Crops

(2022) Mariateresa Cardarelli et al.   Plants-Basel

Salt-tolerant bacteria enhance the growth of mung bean (Vigna radiata L.) and uptake of nutrients, and mobilize sodium ions under salt stress condition

(2022) Shreya Desai et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Plant collections for conservation and restoration: Can they be adapted and adaptable?

(2022) Jason G. Bragg et al.   Molecular Ecology Resources

Evaluating biological properties of topsoil for post‐mining ecological restoration: different assessment methods give different results

(2022) Haylee M. D'Agui et al.   RESTORATION ECOLOGY

Soil microbial inoculants for sustainable agriculture: Limitations and opportunities

(2022) Maureen O'Callaghan et al.   SOIL USE AND MANAGEMENT

Variation of the seed endophytic bacteria among plant populations and their plant growth‐promoting activities in a wild mustard plant species, Capsella bursa‐pastoris

(2022) Byungwook Choi et al.   Ecology and Evolution

The Role of Soil Microbial Diversity in the Conservation of Native Seed Bacterial Microbiomes

(2022) Ankush Chandel et al.   Microorganisms

Temporal Dynamics of Endogenous Bacterial Composition in Rice Seeds During Maturation and Storage, and Spatial Dynamics of the Bacteria During Seedling Growth

(2022) Swarnalee Dutta et al.   Frontiers in Microbiology

Longitudinal transmission of bacterial and fungal communities from seed to seed in rice

(2022) Hyun Kim et al.   Communications Biology

The culturable seed mycobiome of two Banksia species is dominated by latent saprotrophic and multi-trophic fungi

(2022) A.A. Mertin et al.   Fungal Biology

Native bacteria and cyanobacteria can influence seedling emergence and growth of native plants used in dryland restoration

(2022) Frederick A. Dadzie et al.   JOURNAL OF APPLIED ECOLOGY

Single Seed Microbiota: Assembly and Transmission from Parent Plant to Seedling

(2022) Guillaume Chesneau et al.   mBio

Seed Endophyte bacteria enhance drought stress tolerance in Hordeum vulgare by regulating, physiological characteristics, antioxidants and minerals uptake

(2022) Zainul Abideen et al.   Frontiers in Plant Science

Engineering plant microbiomes by integrating eco-evolutionary principles into current strategies

(2022) Zayda P. Morales Moreira et al.   CURRENT OPINION IN PLANT BIOLOGY

From seed to seed: the role of microbial inheritance in the assembly of the plant microbiome

(2022) Ahmed Abdelfattah et al.   TRENDS IN MICROBIOLOGY

Fungal Pathogens and Seed Storage in the Dry State

(2022) Isaura Martín et al.   Plants-Basel

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives

(2021) Rowena Hill et al.   Frontiers in Microbiology

The core seed mycobiome of Pseudotsuga menziesii var. menziesii across provenances of the Pacific Northwest, USA

(2021) Gillian E. Bergmann et al.   MYCOLOGIA

Invasive Lactuca serriola seeds contain endophytic bacteria that contribute to drought tolerance

(2021) Seorin Jeong et al.   Scientific Reports

Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat

(2021) Holly Hone et al.   Scientific Reports

Distinct Endophytic Bacterial Communities Inhabiting Seagrass Seeds

(2021) Flavia Tarquinio et al.   Frontiers in Microbiology

Seed Treatment With Systemic Fungicides: Time for Review

(2021) Mulla S. Ayesha et al.   Frontiers in Plant Science

Seed-Transmitted Bacteria and Fungi Dominate Juvenile Plant Microbiomes

(2021) David Johnston-Monje et al.   Frontiers in Microbiology

Implications of Seed Vault Storage Strategies for Conservation of Seed Bacterial Microbiomes

(2021) Ankush Chandel et al.   Frontiers in Microbiology

Identification and Characterisation of Seed-Borne Fungal Pathogens Associated with Maize (Zea mays L.)

(2021) M. L. Goko et al.   International Journal of Microbiology

Seed enhancement: getting seeds restoration‐ready

(2020) Simone Pedrini et al.   RESTORATION ECOLOGY

Seed storage: maintaining seed viability and vigor for restoration use

(2020) Marcello De Vitis et al.   RESTORATION ECOLOGY

Ensuring seed quality in ecological restoration: Native seed cleaning and testing

(2020) Stephanie Frischie et al.   RESTORATION ECOLOGY

The differences and overlaps in the seed‐resident microbiome of four Leguminous and three Gramineous forages

(2020) Ya Dai et al.   Microbial Biotechnology

Plant diversity and litter accumulation mediate the loss of foliar endophyte fungal richness following nutrient addition

(2020) Jeremiah A. Henning et al.   ECOLOGY

Rhizobacterial species richness improves sorghum growth and soil nutrient synergism in a nutrient-poor greenhouse soil

(2020) Mohammad Radhi Sahib et al.   Scientific Reports

Priority effects of wheat seed endophytes on a rhizosphere symbiosis

(2019) Mary E. Ridout et al.   SYMBIOSIS

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Alternaria leaf spot of cotton seedlings grown in New South Wales, Australia is predominantly associated with Alternaria alternata

(2019) Duy P. Le et al.   AUSTRALASIAN PLANT PATHOLOGY

Shifts in the Composition of the Microbiota of Stored Wheat Grains in Response to Fumigation

(2019) Manoj Kumar Solanki et al.   Frontiers in Microbiology

More Than the Sum of Its Parts: Microbiome Biodiversity as a Driver of Plant Growth and Soil Health

(2019) Muhammad Saleem et al.   Annual Review of Ecology Evolution and Systematics

How significant are endophytic fungi in bromeliad seeds and seedlings? Effects on germination, survival and performance of two epiphytic plant species

(2019) Céline Leroy et al.   Fungal Ecology

Reconditioning Degraded Mine Site Soils With Exogenous Soil Microbes: Plant Fitness and Soil Microbiome Outcomes

(2019) Benjamin Moreira-Grez et al.   Frontiers in Microbiology

Understanding why Effective Fungicides against Individual Soilborne Pathogens are Ineffective with Soilborne Pathogen Complexes

(2019) Ming Pei You et al.   PLANT DISEASE

Successional dynamics of soil fungal diversity along a restoration chronosequence post‐coal mining

(2019) Michael R. Ngugi et al.   RESTORATION ECOLOGY

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Transgenerational role of seed mycobiome – an endosymbiotic fungal composition as a prerequisite to stress resilience and adaptive phenotypes in Triticum

(2019) Vladimir Vujanovic et al.   Scientific Reports

Niche differentiation rather than biogeography shapes the diversity and composition of microbiome of Cycas panzhihuaensis

(2019) Ying Zheng et al.   Microbiome

The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars

(2018) Denver I. Walitang et al.   BMC PLANT BIOLOGY

Seed Endophyte Microbiome of Crotalaria pumila Unpeeled: Identification of Plant-Beneficial Methylobacteria

(2018) Ariadna Sánchez-López et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Plant Growth-Promoting Fungus (PGPF) Alternaria sp. A13 Markedly Enhances Salvia miltiorrhiza Root Growth and Active Ingredient Accumulation under Greenhouse and Field Conditions

(2018) Li Zhou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits

(2018) Jonathan W. Leff et al.   ISME Journal

Saving seed microbiomes

(2018) Gabriele Berg et al.   ISME Journal

What Is There in Seeds? Vertically Transmitted Endophytic Resources for Sustainable Improvement in Plant Growth

(2018) Raheem Shahzad et al.   Frontiers in Plant Science

Fungal Endophyte Alternaria tenuissima Can Affect Growth and Selenium Accumulation in Its Hyperaccumulator Host Astragalus bisulcatus

(2018) Stormy D. Lindblom et al.   Frontiers in Plant Science

Incidence, pathogenicity and diversity of Alternaria spp. associated with alternaria leaf spot of canola (Brassica napus ) in Australia

(2018) H. F. D. Al-Lami et al.   PLANT PATHOLOGY

Blue mould decay of stored onion bulbs caused by Penicillium polonicum , P. glabrum and P. expansum

(2017) Nataša Duduk et al.   JOURNAL OF PHYTOPATHOLOGY

Revegetation rewilds the soil bacterial microbiome of an old field

(2017) Nicholas J. C. Gellie et al.   MOLECULAR ECOLOGY

Epichloë festucae endophytic growth in florets, seeds, and seedlings of perennial ryegrass (Lolium perenne)

(2017) Jinge Liu et al.   MYCOLOGIA

Disease protection and allelopathic interactions of seed-transmitted endophytic pseudomonads of invasive reed grass (Phragmites australis)

(2017) James F. White et al.   PLANT AND SOIL

The seed microbiome: Origins, interactions, and impacts

(2017) Eric B. Nelson   PLANT AND SOIL

Fungal endophytes from seeds of invasive, non-native Phragmites australis and their potential role in germination and seedling growth

(2017) Zackery R. C. Shearin et al.   PLANT AND SOIL

Soilborne fungi have host affinity and host-specific effects on seed germination and survival in a lowland tropical forest

(2017) Carolina Sarmiento et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds

(2017) Birgit Mitter et al.   Frontiers in Microbiology

The structure of the Brassica napus seed microbiome is cultivar-dependent and affects the interactions of symbionts and pathogens

(2017) Daria Rybakova et al.   Microbiome

Overcoming physical seed dormancy in priority native species for use in arid-zone restoration programs

(2016) Todd E. Erickson et al.   AUSTRALIAN JOURNAL OF BOTANY

Historical and current climate drive spatial and temporal patterns in fungal endophyte diversity

(2016) Hannah Giauque et al.   Fungal Ecology

Plant microbiota affects seed transmission of phytopathogenic microorganisms

(2016) Matthieu Barret et al.   MOLECULAR PLANT PATHOLOGY

The Cucurbita pepo seed microbiome: genotype-specific composition and implications for breeding

(2016) Eveline Adam et al.   PLANT AND SOIL

Soil quality indicators to assess functionality of restored soils in degraded semiarid ecosystems

(2016) Miriam Muñoz-Rojas et al.   RESTORATION ECOLOGY

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Seed production areas for the global restoration challenge

(2016) Paul G. Nevill et al.   Ecology and Evolution

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Terroir is a key driver of seed-associated microbial assemblages

(2015) Stephanie Klaedtke et al.   ENVIRONMENTAL MICROBIOLOGY

A review: what is the spermosphere and how can it be studied?

(2015) S. Schiltz et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Complementarity among plant growth promoting traits in rhizospheric bacterial communities promotes plant growth

(2015) Mangal Singh et al.   Scientific Reports

Soil bacterial diversity in degraded and restored lands of Northeast Brazil

(2014) Ademir Sérgio Ferreira Araújo et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Emergence Shapes the Structure of the Seed Microbiota

(2014) Matthieu Barret et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Waterproofing Topsoil Stockpiles Minimizes Viability Decline in the Soil Seed Bank in an Arid Environment

(2014) Peter J. Golos et al.   RESTORATION ECOLOGY

Pestalotiopsis revisited

(2014) S.S.N. Maharachchikumbura et al.   STUDIES IN MYCOLOGY

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

Vertical transmission of fungal endophytes is widespread in forbs

(2014) Susan Hodgson et al.   Ecology and Evolution

Effect of fungi and light on seed germination of three Opuntia species from semiarid lands of central Mexico

(2013) Pablo Delgado-Sánchez et al.   JOURNAL OF PLANT RESEARCH

Seed treatments to control seedborne fungal pathogens of vegetable crops

(2013) Valeria Mancini et al.   PEST MANAGEMENT SCIENCE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Investigation on diversity and population succession dynamics of endophytic bacteria from seeds of maize (Zea mays L., Nongda108) at different growth stages

(2012) Yang Liu et al.   ANNALS OF MICROBIOLOGY

Fungal endophytes improve wheat seed germination under heat and drought stress

(2012) Michelle Hubbard et al.   Botany

Three new additions to the genus Talaromyces isolated from Atlantis sandveld fynbos soils

(2012) C. M. Visagie et al.   PERSOONIA

Seed Treatment Optimizes Benefits of Seed Bank Storage for Restoration-Ready Seeds: The Feasibility of Prestorage Dormancy Alleviation for Mine-Site Revegetation

(2012) Shane R. Turner et al.   RESTORATION ECOLOGY

Effects of Resident Soil Fungi and Land Use History Outweigh Those of Commercial Mycorrhizal Inocula: Testing a Restoration Strategy in Unsterilized Soil

(2012) Elisabeth C. Paluch et al.   RESTORATION ECOLOGY

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Taxonomic studies of the Penicillium glabrum complex and the description of a new species P. subericola

(2011) M. C. Barreto et al.   FUNGAL DIVERSITY

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Neotyphodium endophyte increases Achnatherum inebrians (drunken horse grass) resistance to herbivores and seed predators

(2011) X X ZHANG et al.   WEED RESEARCH

Toxicological Properties of Citrinin

(2010) Dubravka Flajs et al.   Arhiv za Higijenu Rada i Toksikologiju-Archives of Industrial Hygiene and Toxicology

Seed survival in soil: interacting effects of predation, dormancy and the soil microbial community

(2010) James W. Dalling et al.   JOURNAL OF ECOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Are fungi important for breaking seed dormancy in desert species? Experimental evidence in Opuntia streptacantha (Cactaceae)

(2010) P. Delgado-Sánchez et al.   PLANT BIOLOGY

Viability of Neotyphodium endophytic fungus and endophyte-infected and noninfected Lolium multiflorum seeds

(2009) Pedro E. Gundel et al.   Botany

Symbiosis Lost: Imperfect Vertical Transmission of Fungal Endophytes in Grasses

(2008) Michelle E. Afkhami et al.   AMERICAN NATURALIST

Plant growth promotion and Penicillium citrinum

(2008) Sumera Khan et al.   BMC MICROBIOLOGY

Seed supply for broadscale restoration: maximizing evolutionary potential

(2008) Linda M. Broadhurst et al.   Evolutionary Applications

Host generalists dominate fungal communities associated with seeds of four neotropical pioneer species

(2008) Courtney G. Kluger et al.   JOURNAL OF TROPICAL ECOLOGY

Variable effects of endophytic fungus on seedling establishment of fine fescues

(2008) Piippa R. Wäli et al.   OECOLOGIA

Integrating Soil Ecological Knowledge into Restoration Management

(2008) Liam Heneghan et al.   RESTORATION ECOLOGY

Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: a case study for analysing fungal environmental samples

(2008) Jana M. U'Ren et al.