Genetic markers associated with divergent selection against the parasite Marteilia cochillia in common cockle (Cerastoderma edule) using transcriptomics and population genomics data

A single genomic region involving a putative chromosome rearrangement in flat oyster ( Ostrea edulis ) is associated with differential host resilience to the parasite Bonamia ostreae

(2022) Inés Martínez Sambade et al.   Evolutionary Applications

Comparative Proteomics of Ostreid Herpesvirus 1 and Pacific Oyster Interactions With Two Families Exhibiting Contrasted Susceptibility to Viral Infection

(2021) Maxime Leprêtre et al.   Frontiers in Immunology

Investigating mechanisms underlying genetic resistance to Salmon Rickettsial Syndrome in Atlantic salmon using RNA sequencing

(2021) Carolina P. Moraleda et al.   BMC GENOMICS

Biology of the common cockle Cerastoderma edule (Linnaeus, 1758) in Ria de Aveiro (NW Portugal): Implications for fisheries management

(2021) Francisco Maia et al.   JOURNAL OF SEA RESEARCH

The Enhanced Immune Protection in Small Abalone Haliotis diversicolor Against a Secondary Infection With Vibrio harveyi

(2021) Tuo Yao et al.   Frontiers in Immunology

Genomic survey of edible cockle ( Cerastoderma edule ) in the Northeast Atlantic: A baseline for sustainable management of its wild resources

(2021) Manuel Vera et al.   Evolutionary Applications

Potential of genomic selection for improvement of resistance to ostreid herpesvirus in Pacific oyster ( Crassostrea gigas )

(2020) A. P. Gutierrez et al.   ANIMAL GENETICS

Fine‐scale seascape genomics of an exploited marine species, the common cockle Cerastoderma edule , using a multimodelling approach

(2020) Ilaria Coscia et al.   Evolutionary Applications

Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

(2020) Diego Robledo et al.   BMC GENOMICS

Marteilia cochillia is released into seawater via cockle Cerastoderma edule faeces

(2020) Susana Darriba et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Potential for Genetic Improvement of Resistance to Perkinsus olseni in the Manila Clam, Ruditapes philippinarum, Using DNA Parentage Assignment and Mass Spawning

(2020) Morgan Smits et al.   Frontiers in Veterinary Science

Modulatory function of calmodulin on phagocytosis and potential regulation mechanisms in the blood clam Tegillarca granosa

(2020) Yu Han et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Signatures of selection for bonamiosis resistance in European flat oyster ( Ostrea edulis ): New genomic tools for breeding programs and management of natural resources

(2019) Manuel Vera et al.   Evolutionary Applications

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Proteomic profile of Ostrea edulis haemolymph in response to bonamiosis and identification of candidate proteins as resistance markers

(2018) NR de la Ballina et al.   DISEASES OF AQUATIC ORGANISMS

Long-term affected flat oyster ( Ostrea edulis ) haemocytes show differential gene expression profiles from naïve oysters in response to Bonamia ostreae

(2018) P. Ronza et al.   GENOMICS

Immunological memory: What's in a name?

(2018) Thomas Pradeu et al.   IMMUNOLOGICAL REVIEWS

Genomic Tools and Selective Breeding in Molluscs

(2018) Christopher M. Hollenbeck et al.   Frontiers in Genetics

A global review of the ecosystem services provided by bivalve aquaculture

(2018) Andrew van der Schatte Olivier et al.   Reviews in Aquaculture

StructureSelector : A web-based software to select and visualize the optimal number of clusters using multiple methods

(2017) Yu-Long Li et al.   Molecular Ecology Resources

Facilitation by ecosystem engineers enhances nutrient effects in an intertidal system

(2017) Britas Klemens Eriksson et al.   Ecosphere

Differential gene expression and SNP association between fast- and slow-growing turbot (Scophthalmus maximus)

(2017) Diego Robledo et al.   Scientific Reports

Performance of selectively-bred lines of eastern oyster, Crassostrea virginica , across eastern US estuaries

(2016) Dina A. Proestou et al.   AQUACULTURE

Current genetic status, temporal stability and structure of the remnant wild European flat oyster populations: conservation and restoring implications

(2016) Manuel Vera et al.   MARINE BIOLOGY

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

genepopedit: a simple and flexible tool for manipulating multilocus molecular data in R

(2016) Ryan R. E. Stanley et al.   Molecular Ecology Resources

Mass selection for survival and resistance to OsHV-1 infection in Crassostrea gigas spat in field conditions: response to selection after four generations

(2015) Lionel Dégremont et al.   AQUACULTURE

Modelling the effect of Cerastoderma edule bioturbation on microphytobenthos resuspension towards the planktonic food web of estuarine ecosystem

(2015) Christiane Rakotomalala et al.   ECOLOGICAL MODELLING

Immune responses to infectious diseases in bivalves

(2015) Bassem Allam et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Marteilia spp. parasites in bivalves: A revision of recent studies

(2015) Noèlia Carrasco et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Cockle Cerastoderma edule fishery collapse in the Ría de Arousa (Galicia, NW Spain) associated with the protistan parasite Marteilia cochillia

(2014) A Villalba et al.   DISEASES OF AQUATIC ORGANISMS

Mass mortalities in bivalve populations: A review of the edible cockle Cerastoderma edule (L.)

(2014) Daryl Burdon et al.   ESTUARINE COASTAL AND SHELF SCIENCE

The potential impact of climate change on the infectious diseases of commercially important shellfish populations in the Irish Sea--a review

(2014) A. F. Rowley et al.   ICES JOURNAL OF MARINE SCIENCE

Cysteine Cathepsins as Regulators of the Cytotoxicity of NK and T Cells

(2014) Milica PeriÅ¡ić Nanut et al.   Frontiers in Immunology

Marteilia cochillia sp. nov., a new Marteilia species affecting the edible cockle Cerastoderma edule in European waters

(2013) Noèlia Carrasco et al.   AQUACULTURE

Molecular characterization and expression analysis of four cathepsin L genes in the razor clam, Sinonovacula constricta

(2013) Donghong Niu et al.   FISH & SHELLFISH IMMUNOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers

(2013) Francois Besnier et al.   PLoS One

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

Bivalve-enhanced nitrogen removal from coastal estuaries

(2012) Ruth H. Carmichael et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genetic diversity and population differentiation in the cockle Cerastoderma edule estimated by microsatellite markers

(2012) L. Martínez et al.   HELGOLAND MARINE RESEARCH

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

THE DEVELOPMENT OF THE LAMELLIBRANCH CARDIUM EDULE L.

(2010) GWENDOLINE A. CREEK   PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Erodibility of a mixed mudflat dominated by microphytobenthos and Cerastoderma edule, East Frisian Wadden Sea, Germany

(2009) T.J. Andersen et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Modelling of common European cockle Cerastoderma edule fishing grounds aimed at sustainable management of traditional harvesting

(2009) Alain Ponsero et al.   FISHERIES SCIENCE

Signals of major histocompatibility complex overdominance in a wild salmonid population

(2009) J. Kekalainen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The genetic diversity pattern of Mytilus galloprovincialis in Galician Rías (NW Iberian estuaries)

(2008) Angel P. Diz et al.   AQUACULTURE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources