Signatures of selection for bonamiosis resistance in European flat oyster ( Ostrea edulis ): New genomic tools for breeding programs and management of natural resources

Parallel evolution and adaptation to environmental factors in a marine flatfish: Implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus )

(2018) Fernanda Dotti do Prado et al.   Evolutionary Applications

SNP identification and validation on genomic DNA for studying genetic diversity in Thunnus albacares and Scomberomorus brasiliensis by combining RADseq and long read high throughput sequencing

(2018) Zoila Raquel Siccha-Ramirez et al.   FISHERIES RESEARCH

Long-term affected flat oyster ( Ostrea edulis ) haemocytes show differential gene expression profiles from naïve oysters in response to Bonamia ostreae

(2018) P. Ronza et al.   GENOMICS

Combining population genomics and fitness QTLs to identify the genetics of local adaptation inArabidopsis thaliana

(2018) Nicholas Price et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracing the genetic impact of farmed turbot Scophthalmus maximus on wild populations

(2018) FD Prado et al.   Aquaculture Environment Interactions

Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation

(2017) Carlos Carreras et al.   Scientific Reports

A genome scan for selection signatures comparing farmed Atlantic salmon with two wild populations: Testing colocalization among outlier markers, candidate genes, and quantitative trait loci for production traits

(2016) Lei Liu et al.   Evolutionary Applications

Construction of an Ostrea edulis database from genomic and expressed sequence tags (ESTs) obtained from Bonamia ostreae infected haemocytes: Development of an immune-enriched oligo-microarray

(2016) Belén G. Pardo et al.   FISH & SHELLFISH IMMUNOLOGY

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

(2016) L. Bernatchez   JOURNAL OF FISH BIOLOGY

Investigating the significance of the role of Ostrea edulis larvae in the transmission and transfer of Bonamia ostreae

(2016) Grace Flannery et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Current genetic status, temporal stability and structure of the remnant wild European flat oyster populations: conservation and restoring implications

(2016) Manuel Vera et al.   MARINE BIOLOGY

Identification and validation of single nucleotide polymorphisms as tools to detect hybridization and population structure in freshwater stingrays

(2016) Vanessa P. Cruz et al.   Molecular Ecology Resources

Habitat Discontinuities Separate Genetically Divergent Populations of a Rocky Shore Marine Fish

(2016) Enrique Blanco Gonzalez et al.   PLoS One

Mass selection for survival and resistance to OsHV-1 infection in Crassostrea gigas spat in field conditions: response to selection after four generations

(2015) Lionel Dégremont et al.   AQUACULTURE

Can survival of European flat oysters following experimental infection with Bonamia ostreae be predicted using QTLs?

(2015) Estelle Harrang et al.   AQUACULTURE

Development of Vibrio spp. infection resistance related SNP markers using multiplex SNaPshot genotyping method in the clam Meretrix meretrix

(2015) Qing Nie et al.   FISH & SHELLFISH IMMUNOLOGY

Patterns of genetic variation across the distribution range of the cockle Cerastoderma edule inferred from microsatellites and mitochondrial DNA

(2015) Luisa Martínez et al.   MARINE BIOLOGY

A genome scan for candidate genes involved in the adaptation of turbot (Scophthalmus maximus)

(2015) Román Vilas et al.   Marine Genomics

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

(2015) John R. Candy et al.   Molecular Ecology Resources

A molecular tool for parentage analysis in the Mediterranean mussel (Mytilus galloprovincialis)

(2014) Ania Pino-Querido et al.   AQUACULTURE RESEARCH

Bonamia parasites: a rapidly changing perspective on a genus of important mollusc pathogens

(2014) MY Engelsma et al.   DISEASES OF AQUATIC ORGANISMS

Thirty-year history of Irish (Rossmore) Ostrea edulis selectively bred for disease resistance to Bonamia ostreae

(2014) SA Lynch et al.   DISEASES OF AQUATIC ORGANISMS

Identification of potential general markers of disease resistance in American oysters, Crassostrea virginica through gene expression studies

(2014) Chamilani Nikapitiya et al.   FISH & SHELLFISH IMMUNOLOGY

Breeding and Domestication of Eastern Oyster (Crassostrea virginica) Lines for Culture in the Mid-Atlantic, Usa: Line Development and Mass Selection for Disease Resistance

(2014) Anu Frank-Lawale et al.   JOURNAL OF SHELLFISH RESEARCH

New genetic markers to identify European resistant abalone to vibriosis revealed by high-resolution melting analysis, a sensitive and fast approach

(2014) Anne-Leila Meistertzheim et al.   MARINE BIOLOGY

Contrasted survival under field or controlled conditions displays associations between mRNA levels of candidate genes and response to OsHV-1 infection in the Pacific oyster Crassostrea gigas

(2014) Julien Normand et al.   Marine Genomics

Infectious microbial diseases and host defense responses in Sydney rock oysters

(2014) David A. Raftos et al.   Frontiers in Microbiology

Epidemiology of Bonamia in the UK, 1982 to 2012

(2013) I Laing et al.   DISEASES OF AQUATIC ORGANISMS

The Population Genomics of Repeated Evolution in the Blind Cavefish Astyanax mexicanus

(2013) Martina Bradic et al.   MOLECULAR BIOLOGY AND EVOLUTION

Regional environmental pressure influences population differentiation in turbot (Scophthalmus maximus)

(2013) S. G. Vandamme et al.   MOLECULAR ECOLOGY

Sequence Polymorphism and Expression Variability of Crassostrea gigas Immune Related Genes Discriminate Two Oyster Lines Contrasted in Term of Resistance to Summer Mortalities

(2013) Paulina Schmitt et al.   PLoS One

QTL Map Meets Population Genomics: An Application to Rice

(2013) Jeffrey A. Fawcett et al.   PLoS One

Mutation in promoter region of a serine protease inhibitor confers Perkinsus marinus resistance in the eastern oyster (Crassostrea virginica)

(2012) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Can the protozoan parasite Bonamia ostreae infect larvae of flat oysters Ostrea edulis?

(2011) Isabelle Arzul et al.   VETERINARY PARASITOLOGY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Variation in anonymous and EST-microsatellites suggests adaptive population divergence in turbot

(2010) R Vilas et al.   MARINE ECOLOGY PROGRESS SERIES

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Combining Two-Stage Testing and Interval Mapping Strategies to Detect QTL for Resistance to Bonamiosis in the European Flat Oyster Ostrea edulis

(2009) D. Lallias et al.   MARINE BIOTECHNOLOGY

Population genomics of marine fishes: identifying adaptive variation in space and time

(2009) EINAR E. NIELSEN et al.   MOLECULAR ECOLOGY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources