Characterising the mechanisms underlying genetic resistance to amoebic gill disease in Atlantic salmon using RNA sequencing

Genomic and Transcriptomic Analysis of Amoebic Gill Disease Resistance in Atlantic Salmon (Salmo salar L.)

(2019) Solomon Antwi Boison et al.   Frontiers in Genetics

Discovery and Functional Annotation of Quantitative Trait Loci Affecting Resistance to Sea Lice in Atlantic Salmon

(2019) Diego Robledo et al.   Frontiers in Genetics

Potential of Genome Editing to Improve Aquaculture Breeding and Production

(2019) Remi L. Gratacap et al.   TRENDS IN GENETICS

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing

(2018) Shilin Zhao et al.   BMC BIOINFORMATICS

Opportunistic but Lethal: The Mystery of Paramoebae

(2018) Barbara F. Nowak et al.   TRENDS IN PARASITOLOGY

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

Accuracy of Genomic Evaluations of Juvenile Growth Rate in Common Carp (Cyprinus carpio) Using Genotyping by Sequencing

(2018) Christos Palaiokostas et al.   Frontiers in Genetics

Gene expression analysis of Atlantic salmon gills reveals mucin 5 and interleukin 4/13 as key molecules during amoebic gill disease

(2018) Mar Marcos-López et al.   Scientific Reports

Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals

(2018) Diego Robledo et al.   Frontiers in Genetics

Local and systemic humoral immune response in farmed Atlantic salmon ( Salmo salar L.) under a natural amoebic gill disease outbreak

(2017) Mar Marcos-López et al.   FISH & SHELLFISH IMMUNOLOGY

Future directions in breeding for disease resistance in aquaculture species

(2017) Ross D. Houston   REVISTA BRASILEIRA DE ZOOTECNIA-BRAZILIAN JOURNAL OF ANIMAL SCIENCE

Genomic Prediction Accuracy for Resistance Against Piscirickettsia salmonis in Farmed Rainbow Trout

(2017) Grazyella M. Yoshida et al.   G3-Genes Genomes Genetics

The gill parasite Paramoeba perurans compromises aerobic scope, swimming capacity and ion balance in Atlantic salmon

(2017) Malthe Hvas et al.   Conservation Physiology

Incidence and distribution of amoebic gill disease (AGD) — An epidemiological review

(2016) Tina Oldham et al.   AQUACULTURE

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits

(2016) I. M. MacLeod et al.   BMC GENOMICS

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

AllelicImbalance: an R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing

(2015) Jesper R. Gådin et al.   BMC BIOINFORMATICS

Which Th pathway is involved during late stage amoebic gill disease?

(2015) Ottavia Benedicenti et al.   FISH & SHELLFISH IMMUNOLOGY

The role of regulatory variation in complex traits and disease

(2015) Frank W. Albert et al.   NATURE REVIEWS GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Differentially expressed proteins in gill and skin mucus of Atlantic salmon (Salmo salar) affected by amoebic gill disease

(2014) Victoria A. Valdenegro-Vega et al.   FISH & SHELLFISH IMMUNOLOGY

Economic costs of protistan and metazoan parasites to global mariculture

(2014) A. P. SHINN et al.   PARASITOLOGY

Host protective roles of type 2 immunity: Parasite killing and tissue repair, flip sides of the same coin

(2014) Judith E. Allen et al.   SEMINARS IN IMMUNOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Trim39 ligase keeps apoptosis going

(2012) Christina Karlsson Rosenthal   NATURE CELL BIOLOGY

Interleukin-17C Promotes Th17 Cell Responses and Autoimmune Disease via Interleukin-17 Receptor E

(2011) Seon Hee Chang et al.   IMMUNITY

A review of infectious gill disease in marine salmonid fish

(2011) S O Mitchell et al.   JOURNAL OF FISH DISEASES

Mouse genomic variation and its effect on phenotypes and gene regulation

(2011) Thomas M. Keane et al.   NATURE

IL-17RE is the functional receptor for IL-17C and mediates mucosal immunity to infection with intestinal pathogens

(2011) Xinyang Song et al.   NATURE IMMUNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Antiparasitic activity of the antimicrobial peptide HbβP-1, a member of the β-haemoglobin peptide family

(2010) A J Ullal et al.   JOURNAL OF FISH DISEASES

Genetic variation of gross gill pathology and survival of Atlantic salmon (Salmo salar L.) during natural amoebic gill disease challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Orally delivered siRNA targeting macrophage Map4k4 suppresses systemic inflammation

(2009) Myriam Aouadi et al.   NATURE

Resistance to amoebic gill disease (AGD) is characterised by the transcriptional dysregulation of immune and cell cycle pathways

(2008) James W. Wynne et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Antimicrobial peptides derived from hemoglobin are expressed in epithelium of channel catfish (Ictalurus punctatus, Rafinesque)

(2008) Anirudh J. Ullal et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Coordinated down-regulation of the antigen processing machinery in the gills of amoebic gill disease-affected Atlantic salmon (Salmo salar L.)

(2008) N.D. Young et al.   MOLECULAR IMMUNOLOGY

Biological activities of C1 inhibitor

(2008) Alvin E. Davis et al.   MOLECULAR IMMUNOLOGY