Condensed but liquid-like domain organization of active chromatin regions in living human cells
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Title
Condensed but liquid-like domain organization of active chromatin regions in living human cells
Authors
Keywords
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Journal
Science Advances
Volume 9, Issue 14, Pages -
Publisher
American Association for the Advancement of Science (AAAS)
Online
2023-04-06
DOI
10.1126/sciadv.adf1488
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Note: Only part of the references are listed.- Single nucleosome tracking to study chromatin plasticity
- (2022) Melike Lakadamyali CURRENT OPINION IN CELL BIOLOGY
- Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging
- (2022) Michele Gabriele et al. SCIENCE
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- (2022) Satoru Ide et al. BIOESSAYS
- A mitotic chromatin phase transition prevents perforation by microtubules
- (2022) Maximilian W. G. Schneider et al. NATURE
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- (2022) Yue Li et al. Scientific Reports
- Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells
- (2022) Shiori Iida et al. Science Advances
- Cohesin and CTCF control the dynamics of chromosome folding
- (2022) Pia Mach et al. NATURE GENETICS
- Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation
- (2021) Pablo Aurelio Gómez-García et al. Cell Reports
- Mammalian DNA Replication Timing
- (2021) Athanasios E. Vouzas et al. Cold Spring Harbor Perspectives in Biology
- 1,6-hexanediol rapidly immobilizes and condenses chromatin in living human cells
- (2021) Yuji Itoh et al. Life Science Alliance
- Is transcriptional regulation just going through a phase?
- (2021) Geeta J. Narlikar et al. MOLECULAR CELL
- Genome folding through loop extrusion by SMC complexes
- (2021) Iain F. Davidson et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Physical Nature of Chromatin in the Nucleus
- (2021) Kazuhiro Maeshima et al. Cold Spring Harbor Perspectives in Biology
- Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions
- (2021) Stephen E. Farr et al. Nature Communications
- A Brownian ratchet model for DNA loop extrusion by the cohesin complex
- (2021) Torahiko L Higashi et al. eLife
- The loopy world of cohesin
- (2021) Kazuhiro Maeshima et al. eLife
- The Interchromatin Compartment Participates in the Structural and Functional Organization of the Cell Nucleus
- (2020) Thomas Cremer et al. BIOESSAYS
- Biophysical mechanisms of chromatin patterning
- (2020) Fabian Erdel CURRENT OPINION IN GENETICS & DEVELOPMENT
- Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell
- (2020) Kazuhiro Maeshima et al. CURRENT OPINION IN CELL BIOLOGY
- An integrative ENCODE resource for cancer genomics
- (2020) Jing Zhang et al. Nature Communications
- The Self-Organizing Genome: Principles of Genome Architecture and Function
- (2020) Tom Misteli CELL
- Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin
- (2020) Ezequiel Miron et al. Science Advances
- Condensed Chromatin Behaves like a Solid on the Mesoscale In Vitro and in Living Cells
- (2020) Hilmar Strickfaden et al. CELL
- Chromatin: Liquid or Solid?
- (2020) Alexandra Zidovska CELL
- Genome-wide stability of the DNA replication program in single mammalian cells
- (2019) Saori Takahashi et al. NATURE GENETICS
- Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II
- (2019) Ryosuke Nagashima et al. JOURNAL OF CELL BIOLOGY
- epic2 efficiently finds diffuse domains in ChIP-seq data
- (2019) Endre Bakken Stovner et al. BIOINFORMATICS
- Dynamic chromatin organization without the 30-nm fiber
- (2019) Kazuhiro Maeshima et al. CURRENT OPINION IN CELL BIOLOGY
- Organization of fast and slow chromatin revealed by single-nucleosome dynamics
- (2019) S. S. Ashwin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Organization of Chromatin by Intrinsic and Regulated Phase Separation
- (2019) Bryan A. Gibson et al. CELL
- Revealing Hi-C subcompartments by imputing inter-chromosomal chromatin interactions
- (2019) Kyle Xiong et al. Nature Communications
- Correlative live and super-resolution imaging reveals the dynamic structure of replication domains
- (2018) Wanqing Xiang et al. JOURNAL OF CELL BIOLOGY
- Super-Resolution Imaging of Higher-Order Chromatin Structures at Different Epigenomic States in Single Mammalian Cells
- (2018) Jianquan Xu et al. Cell Reports
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- (2018) Yongdae Shin et al. CELL
- Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
- (2018) Bogdan Bintu et al. SCIENCE
- TrackMate: An open and extensible platform for single-particle tracking
- (2017) Jean-Yves Tinevez et al. METHODS
- Nucleosome–nucleosome interactions via histone tails and linker DNA regulate nuclear rigidity
- (2017) Yuta Shimamoto et al. MOLECULAR BIOLOGY OF THE CELL
- Chromatin and lamin A determine two different mechanical response regimes of the cell nucleus
- (2017) Andrew D. Stephens et al. MOLECULAR BIOLOGY OF THE CELL
- Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging
- (2017) Tadasu Nozaki et al. MOLECULAR CELL
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells
- (2017) Horng D. Ou et al. SCIENCE
- Budding yeast chromatin is dispersed in a crowded nucleoplasm in vivo
- (2016) Chen Chen et al. MOLECULAR BIOLOGY OF THE CELL
- Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
- (2016) Alistair N. Boettiger et al. NATURE
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- (2016) V. O. Chagin et al. Nature Communications
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- (2016) Soya Shinkai et al. PLoS Computational Biology
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- (2015) Tsung-Han S. Hsieh et al. CELL
- Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo
- (2015) Maria Aurelia Ricci et al. CELL
- The physical size of transcription factors is key to transcriptional regulation in chromatin domains
- (2015) Kazuhiro Maeshima et al. JOURNAL OF PHYSICS-CONDENSED MATTER
- Liquid-Liquid Phase Separation in Biology
- (2014) Anthony A. Hyman et al. Annual Review of Cell and Developmental Biology
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
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- The role of the nucleosome acidic patch in modulating higher order chromatin structure
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- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
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- (2008) Makio Tokunaga et al. NATURE METHODS
- Robust single-particle tracking in live-cell time-lapse sequences
- (2008) Khuloud Jaqaman et al. NATURE METHODS
- Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ
- (2008) M. Eltsov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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