Deep learning-based adaptive optics for light sheet fluorescence microscopy

Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning

(2022) Chen Li et al.   Biomedical Optics Express

Quantitative analysis of illumination and detection corrections in adaptive light sheet fluorescence microscopy

(2022) Mani Ratnam Rai et al.   Biomedical Optics Express

Maternal organophosphate flame retardant exposure alters the developing mesencephalic dopamine system in fetal rat

(2022) Andrew J Newell et al.   TOXICOLOGICAL SCIENCES

Deep Learning Assisted Zonal Adaptive Aberration Correction

(2021) Biwei Zhang et al.   Frontiers in Physics

Deep Learning-Based Autofocus Method Enhances Image Quality in Light-Sheet Fluorescence Microscopy

(2021) Chen Li et al.   Biomedical Optics Express

Tissue clearing and 3D imaging in developmental biology

(2021) Alba Vieites-Prado et al.   DEVELOPMENT

Tissue clearing and its applications in neuroscience

(2020) Hiroki R. Ueda et al.   NATURE REVIEWS NEUROSCIENCE

VIPR: vectorial implementation of phase retrieval for fast and accurate microscopic pixel-wise pupil estimation

(2020) Boris Ferdman et al.   OPTICS EXPRESS

Direct determination of aberration functions in microscopy by an artificial neural network

(2020) Benjamin P. Cumming et al.   OPTICS EXPRESS

Tissue clearing technique: Recent progress and biomedical applications

(2020) Ting Tian et al.   JOURNAL OF ANATOMY

Three-dimensional imaging of intact porcine cochlea using tissue clearing and custom-built light-sheet microscopy

(2020) Adele Moatti et al.   Biomedical Optics Express

A universal framework for microscope sensorless adaptive optics: Generalized aberration representations

(2020) Q. Hu et al.   APL Photonics

Adaptive optics light-sheet microscopy based on direct wavefront sensing without any guide star

(2019) Antoine Hubert et al.   OPTICS LETTERS

Object-independent image-based wavefront sensing approach using phase diversity images and deep learning

(2019) Qi Xin et al.   OPTICS EXPRESS

Light-sheet microscopy of cleared tissues with isotropic, subcellular resolution

(2019) Tonmoy Chakraborty et al.   NATURE METHODS

Accurate phase retrieval of complex 3D point spread functions with deep residual neural networks

(2019) Leonhard Möckl et al.   APPLIED PHYSICS LETTERS

ZOLA-3D allows flexible 3D localization microscopy over an adjustable axial range

(2018) Andrey Aristov et al.   Nature Communications

A practical guide to adaptive light-sheet microscopy

(2018) Loïc A. Royer et al.   Nature Protocols

Analysis of aberrations and performance evaluation of adaptive optics in two-photon light-sheet microscopy

(2018) Caihua Zhang et al.   OPTICS COMMUNICATIONS

Microscopy: hello, adaptive optics

(2017) Vivien Marx   NATURE METHODS

Adaptive optical fluorescence microscopy

(2017) Na Ji   NATURE METHODS

Lensless computational imaging through deep learning

(2017) Ayan Sinha et al.   Optica

Experience with wavefront sensor and deformable mirror interfaces for wide-field adaptive optics systems

(2016) A. G. Basden et al.   MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

(2016) Loïc A Royer et al.   NATURE BIOTECHNOLOGY

Shrinkage-mediated imaging of entire organs and organisms using uDISCO

(2016) Chenchen Pan et al.   NATURE METHODS

ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging

(2016) Eunsoo Lee et al.   Scientific Reports

Simplified three-dimensional tissue clearing and incorporation of colorimetric phenotyping

(2016) Kevin Sung et al.   Scientific Reports

CLARITY and PACT-based imaging of adult zebrafish and mouse for whole-animal analysis of infections

(2015) M. R. Cronan et al.   Disease Models & Mechanisms

ScaleS: an optical clearing palette for biological imaging

(2015) Hiroshi Hama et al.   NATURE NEUROSCIENCE

In vivo neuroimaging through the highly scattering tissue via iterative multi-photon adaptive compensation technique

(2015) Lingjie Kong et al.   OPTICS EXPRESS

Application and Assessment of Optical Clearing Methods for Imaging of Tissue-Engineered Neural Stem Cell Spheres

(2015) Molly E. Boutin et al.   TISSUE ENGINEERING PART C-METHODS

A versatile clearing agent for multi-modal brain imaging

(2015) Irene Costantini et al.   Scientific Reports

A Rapid Optical Clearing Protocol Using 2,2′-Thiodiethanol for Microscopic Observation of Fixed Mouse Brain

(2015) Yuka Aoyagi et al.   PLoS One

Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis

(2014) Etsuo A. Susaki et al.   CELL

iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging

(2014) Nicolas Renier et al.   CELL

Rapid adaptive optical recovery of optimal resolution over large volumes

(2014) Kai Wang et al.   NATURE METHODS

A Simple Method for 3D Analysis of Immunolabeled Axonal Tracts in a Transparent Nervous System

(2014) Morgane Belle et al.   Cell Reports

Adaptive optical microscopy: the ongoing quest for a perfect image

(2014) Martin J Booth   Light-Science & Applications

Phase diversity for three-dimensional imaging

(2013) Peter Kner   JOURNAL OF THE OPTICAL SOCIETY OF AMERICA A-OPTICS IMAGE SCIENCE AND VISION

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

Imaging Morphogenesis: Technological Advances and Biological Insights

(2013) P. J. Keller   SCIENCE

3D adaptive optics in a light sheet microscope

(2012) Cyril Bourgenot et al.   OPTICS EXPRESS

Accuracy of correction in modal sensorless adaptive optics

(2012) Aurélie Facomprez et al.   OPTICS EXPRESS

Light sheet microscopy for real-time developmental biology

(2011) Michael Weber et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Light sheet microscopy of living or cleared specimens

(2011) Philipp J Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

Shack-Hartmann wavefront-sensor-based adaptive optics system for multiphoton microscopy

(2010) Jae Won Cha et al.   JOURNAL OF BIOMEDICAL OPTICS

Wavefront aberration measurements and corrections through thick tissue using fluorescent microsphere reference beacons

(2010) Oscar Azucena et al.   OPTICS EXPRESS

Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues

(2009) Na Ji et al.   NATURE METHODS

Image-based adaptive optics for two-photon microscopy

(2009) Delphine Débarre et al.   OPTICS LETTERS