Article
Biochemical Research Methods
Yang Liu, Bingxi Liu, John Green, Carly Duffy, Ming Song, James D. Lauderdale, Peter Kner
Summary: The combination of an electrically tunable lens and adaptive optics allows for high-resolution imaging of a volume of 499 x 499 x 192 cubic micrometers. Compared to a system without adaptive optics, the signal to background ratio has increased by a factor of 3.5. While the current imaging speed is 7s/volume, it should be easy to increase it to under 1s per volume.
BIOMEDICAL OPTICS EXPRESS
(2023)
Article
Optics
Sharika Mohanan, Lexander D. Corbett
Summary: It has been demonstrated that well aligned remote focusing microscopes exhibit residual spherical aberration outside the focal plane, and this study proposes a compensation method using a correction collar controlled by a stepper motor. The study verifies the accuracy of the compensation method using a Shack-Hartmann wavefront sensor, and discusses the limited impact of spherical aberration compensation on the diffraction limited range of the remote focusing system.
Article
Engineering, Electrical & Electronic
Manna Dai, Gao Xiao, Lance Fiondella, Ming Shao, Yu Shrike Zhang
Summary: This paper optimizes artificial intelligence techniques to provide clear and natural biomedical imaging, demonstrating the significant improvements in spatial resolution of mini-microscopy and regular-microscopy achieved through a deep learning-enabled super-resolution method. Qualitative and quantitative comparisons reveal the advantages of the deep learning approach in enhancing image quality.
SENSORS AND ACTUATORS A-PHYSICAL
(2021)
Article
Geosciences, Multidisciplinary
Jingwen Zeng, Liguo Han, Zhuo Xu, Tianwei Lan
Summary: The Marchenko method calculates Green's functions from the subsurface to the surface using the reflection response from the surface and direct arrivals from selected subsurface focal points. However, incorrect estimation of direct arrivals can lead to errors in the focusing functions, affecting the image quality. To address this, a deep learning and transfer learning approach is introduced to correct the focusing functions. A neural network is constructed and trained in a small imaging region using deep learning, and then the model is updated for an extended area using transfer learning. This approach allows for accurate focusing functions in a larger region without training an additional model.
JOURNAL OF APPLIED GEOPHYSICS
(2023)
Article
Optics
Kaiqiang Wang, MengMeng Zhang, Ju Tang, Lingke Wang, Liusen Hu, Xiaoyan Wu, Wei Li, Jianglei Di, Guodong Liu, Jianlin Zhao
Summary: The study compared the characteristics of direct and indirect reconstruction methods using deep learning neural networks for wavefront sensing and aberration correction in atmospheric turbulence. The research verified the generalization ability of the network for single and multiple objects, as well as the correction effect on a turbulence pool and feasibility in a real atmospheric turbulence environment.
Article
Biochemistry & Molecular Biology
Ruheng Shi, Yuanlong Zhang, Tiankuang Zhou, Lingjie Kong
Summary: High-speed, optical-sectioning imaging is crucial in biomedical studies where most bio-structures are in three-dimensions. The HiLo-based LSTFM method proposed in this study enhances image contrast and axial confinement in deep imaging, demonstrating its superiority for imaging neurons and dynamic microglia in mouse brains.
Article
Optics
Xiangyu Pei, Xunbo Yu, Xin Gao, Xinhui Xie, Yuedi Wang, Xinzhu Sang, Binbin Yan
Summary: An end-to-end joint optimization method is proposed for optimizing DOE and aberration correction in integral imaging light field display. The method establishes a DOE model using thickness as the variable and utilizes a deep learning network for image preprocessing, leading to an 8 dB increase in the peak signal to noise ratio of the optimized image.
CHINESE OPTICS LETTERS
(2022)
Article
Optics
You Zhou, Zhouyu Jin, Qianhui Zhao, Bo Xiong, Xun Cao
Summary: Optical aberration is a common issue in optical microscopes and can lead to low contrast, blurring, and distortion in imaging. Light-field microscopy (LFM) has recently been used for rapid volumetric imaging, but spherical aberration affects its imaging performance. To address this, the aberration-modeling view-channel-depth (AM-VCD) network is proposed for LFM reconstruction, achieving aberration-corrected high-speed visualization of 3D processes. This method enables convenient observation of the 3D dynamics of samples in solution without hardware modifications.
LASER & PHOTONICS REVIEWS
(2023)
Article
Computer Science, Artificial Intelligence
K. Ruwani M. Fernando, Chris P. Tsokos
Summary: Clinical diagnosis and treatment decisions require the integration of patient-specific data and clinical reasoning. Cancer, with its diverse forms of disease evolution, presents a unique context influencing treatment decisions. Biomedical imaging, especially deep learning, has become the standard for non-invasive disease assessment, improving clinical outcome prediction and therapeutic planning.
INFORMATION FUSION
(2023)
Review
Biochemical Research Methods
Soumyabrata Banik, Sindhoora Kaniyala Melanthota, Arbaaz, Joel Markus Vaz, Vishak Madhwaraj Kadambalithaya, Iftak Hussain, Sibasish Dutta, Nirmal Mazumder
Summary: Smartphone-based imaging devices have a wide range of biomedical applications, including histopathological examination, detection of bacteria and viruses, food technology, and routine diagnosis. The optical arrangement of these devices can be adjusted based on specific requirements, enhancing their versatility and applicability in various settings. These devices are also enhanced with deep learning methods to improve efficiency.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY
(2021)
Article
Neurosciences
Stephane Bancelin, Luc Mercier, Emanuele Murana, U. Valentin Nagerl
Summary: The study aimed to develop and validate a method based on adaptive optics for a priori correction of spherical aberrations to improve the spatial resolution of STED microscopy inside thick biological tissue. Experimental results demonstrated that the corrections substantially increased image quality in living brain slices, allowing for clear measurement of small structures at depth.
Article
Computer Science, Software Engineering
Shiqi Chen, Huajun Feng, Dexin Pan, Zhihai Xu, Qi Li, Yueting Chen
Summary: This work proposes a practical method for recovering image degradation caused by optical aberrations, successfully removing spatially variant blur and color dispersion. The proposed approach achieves better results with a lower computational overhead compared to state-of-the-art deblur methods.
ACM TRANSACTIONS ON GRAPHICS
(2021)
Article
Optics
Yue Wang, Jiarui Lei, Jianfeng Zheng, Xulongoi Wang, Miao Cheng, Ming Liu, Junan Zhang, Weibin Chen, Xiaoyao Hu, Weizhong Gu, Shiwei Guo, Xiaobo Hu, Zhigang Gao, Dong Liu
Summary: A microscope requires careful assembly, alignment, and testing due to its complex lenses. Chromatic aberration correction is important but can increase weight and cost. However, this paper proposes an algorithm that shifts some correction tasks to post-processing, achieving higher-quality images without changing hardware or optical parameters.
Review
Acoustics
Janek Groehl, Melanie Schellenberg, Kris Dreher, Lena Maier-Hein
Summary: Photoacoustic imaging (PAI) is a promising emerging imaging modality that enables spatially resolved imaging of optical tissue properties. However, extracting relevant tissue parameters from raw data is difficult, leading to the application of deep learning methods in PAI. These methods have advantages like fast computation times and adaptability to various problems, facilitating clinical translation.
Article
Optics
Jakob G. P. Lingg, Thomas S. Bischof, Bernardo A. Arus, Emily D. Cosco, Ellen M. Sletten, Christopher J. Rowlands, Oliver T. Bruns, Andriy Chmyrov
Summary: The development of fluorophores with photoemission beyond 1000 nm provides the opportunity to develop novel fluorescence microscopes sensitive to those wavelengths. Imaging at wavelengths beyond the visible spectrum enables imaging depths of hundreds of microns in intact tissue, making this attractive for volumetric imaging applications.
LASER & PHOTONICS REVIEWS
(2023)