Light-sheet microscopy of cleared tissues with isotropic, subcellular resolution

Restricted Hematopoietic Progenitors and Erythropoiesis Require SCF from Leptin Receptor+ Niche Cells in the Bone Marrow

(2019) Stefano Comazzetto et al.   Cell Stem Cell

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution

(2019) Ruixuan Gao et al.   SCIENCE

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples

(2019) David Hörl et al.   NATURE METHODS

The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue

(2019) Fabian F. Voigt et al.   NATURE METHODS

Robust and automated detection of subcellular morphological motifs in 3D microscopy images

(2019) Meghan K. Driscoll et al.   NATURE METHODS

Light sheet theta microscopy for rapid high-resolution imaging of large biological samples

(2018) Bianca Migliori et al.   BMC BIOLOGY

Tissue clearing of both hard and soft tissue organs with the PEGASOS method

(2018) Dian Jing et al.   CELL RESEARCH

Thin-sheet laser imaging microscopy for optical sectioning of thick tissues

(2018) Peter A. Santi et al.   BIOTECHNIQUES

High-resolution ultramicroscopy of the developing and adult nervous system in optically cleared Drosophila melanogaster

(2018) Marko Pende et al.   Nature Communications

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

(2017) Alexandra-Chloé Villani et al.   SCIENCE

Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments

(2016) Erik S. Welf et al.   DEVELOPMENTAL CELL

Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies

(2016) Paul W Tillberg et al.   NATURE BIOTECHNOLOGY

Imaging multicellular specimens with real-time optimized tiling light-sheet selective plane illumination microscopy

(2016) Qinyi Fu et al.   Nature Communications

Light-sheet microscopy imaging of a whole cleared rat brain with Thy1-GFP transgene

(2016) Marzena Stefaniuk et al.   Scientific Reports

Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy

(2015) Kevin M. Dean et al.   BIOPHYSICAL JOURNAL

SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function

(2015) Raju Tomer et al.   CELL

Clarifying Tissue Clearing

(2015) Douglas S. Richardson et al.   CELL

Deep imaging of bone marrow shows non-dividing stem cells are mainly perisinusoidal

(2015) Melih Acar et al.   NATURE

Extend the field of view of selective plan illumination microscopy by tiling the excitation light sheet

(2015) Liang Gao   OPTICS EXPRESS

Rapid adaptive optical recovery of optimal resolution over large volumes

(2014) Kai Wang et al.   NATURE METHODS

Advanced CLARITY for rapid and high-resolution imaging of intact tissues

(2014) Raju Tomer et al.   Nature Protocols

Permanent Genetic Access to Transiently Active Neurons via TRAP: Targeted Recombination in Active Populations

(2013) Casey J. Guenthner et al.   NEURON

A Neural Circuit for Memory Specificity and Generalization

(2013) W. Xu et al.   SCIENCE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Aberration-free three-dimensional multiphoton imaging of neuronal activity at kHz rates

(2012) E. J. Botcherby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics

(2011) Kathryn T. Applegate et al.   JOURNAL OF STRUCTURAL BIOLOGY

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

DLL1-mediated Notch activation regulates endothelial identity in mouse fetal arteries

(2009) I. Sorensen et al.   BLOOD