Selection-driven trait loss in independently evolved cavefish populations
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Selection-driven trait loss in independently evolved cavefish populations
Authors
Keywords
-
Journal
Nature Communications
Volume 14, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-05-04
DOI
10.1038/s41467-023-37909-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Hybridization underlies localized trait evolution in cavefish
- (2022) Rachel L. Moran et al. iScience
- Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages
- (2022) Andrea Fulgione et al. Nature Communications
- AF‐vapeR : A multivariate genome scan for detecting parallel evolution using allele frequency change vectors
- (2022) James R. Whiting et al. Methods in Ecology and Evolution
- Rapid adaptive radiation of Darwin’s finches depends on ancestral genetic modules
- (2022) Carl-Johan Rubin et al. Science Advances
- Novel genome sequence of Chinese cavefish ( Triplophysa rosa ) reveals pervasive relaxation of natural selection in cavefish genomes
- (2022) Qingyuan Zhao et al. MOLECULAR ECOLOGY
- Reduced Oxygen as an Environmental Pressure in the Evolution of the Blind Mexican Cavefish
- (2021) Tyler Boggs et al. Diversity-Basel
- The population genomics of adaptive loss of function
- (2021) J. Grey Monroe et al. HEREDITY
- A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution
- (2021) Wesley C. Warren et al. Nature Communications
- Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation
- (2021) Haruna Nakamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives
- (2021) Magdalena Bohutínská et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A vertebrate adaptive radiation is assembled from an ancient and disjunct spatiotemporal landscape
- (2021) Emilie J. Richards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast two-stage phasing of large-scale sequence data
- (2021) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Pleiotropic function of the oca2 gene underlies the evolution of sleep loss and albinism in cavefish
- (2021) Morgan O’Gorman et al. CURRENT BIOLOGY
- Reinventing the wheel? Reassessing the roles of gene flow, sorting and convergence in repeated evolution
- (2021) Jonathan M. Waters et al. MOLECULAR ECOLOGY
- Convergent evolution of gene regulatory networks underlying plant adaptations to dry environments
- (2021) Mariana A. S. Artur et al. PLANT CELL AND ENVIRONMENT
- Repeated evolution of circadian clock dysregulation in cavefish populations
- (2021) Katya L. Mack et al. PLoS Genetics
- JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
- (2021) Jaime A Castro-Mondragon et al. NUCLEIC ACIDS RESEARCH
- Dating genomic variants and shared ancestry in population-scale sequencing data
- (2020) Patrick K. Albers et al. PLOS BIOLOGY
- rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017)
- (2020) Silas Tittes G3-Genes Genomes Genetics
- Different sources of allelic variation drove repeated color pattern divergence in cichlid fishes
- (2020) Sabine Urban et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Gene Ontology resource: enriching a GOld mine
- (2020) et al. NUCLEIC ACIDS RESEARCH
- Intercontinental genomic parallelism in multiple three-spined stickleback adaptive radiations
- (2020) Isabel S. Magalhaes et al. Nature Ecology & Evolution
- Standing genetic variation as the predominant source for adaptation of a songbird
- (2019) Yu-Ting Lai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA fragility in the parallel evolution of pelvic reduction in stickleback fish
- (2019) Kathleen T. Xie et al. SCIENCE
- Characterizing mutagenic effects of recombination through a sequence-level genetic map
- (2019) Bjarni V. Halldorsson et al. SCIENCE
- ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization
- (2019) John Yin et al. BIOINFORMATICS
- Convergent evolution in the genomics era: new insights and directions
- (2019) Timothy B. Sackton et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Population genomics perspectives on convergent adaptation
- (2019) Kristin M. Lee et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Recurrent convergent evolution at amino acid residue 261 in fish rhodopsin
- (2019) Jason Hill et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Irregularities in genetic variation and mutation rates with environmental stresses
- (2019) Thomas Ferenci ENVIRONMENTAL MICROBIOLOGY
- ShinyGO: a graphical gene-set enrichment tool for animals and plants
- (2019) Steven Xijin Ge et al. BIOINFORMATICS
- Evidence for late Pleistocene origin of Astyanax mexicanus cavefish
- (2018) Julien Fumey et al. BMC EVOLUTIONARY BIOLOGY
- Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback
- (2018) Susan Bassham et al. GENETICS
- Behavioural changes controlled by catecholaminergic systems explain recurrent loss of pigmentation in cavefish
- (2018) Helena Bilandžija et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- diploS/HIC: An Updated Approach to Classifying Selective Sweeps
- (2018) Andrew D. Kern et al. G3-Genes Genomes Genetics
- Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback
- (2018) Susan Bassham et al. GENETICS
- The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus
- (2018) Adam Herman et al. MOLECULAR ECOLOGY
- PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
- (2018) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution
- (2018) Steven M. Van Belleghem et al. PLoS Genetics
- Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
- (2018) Milan Malinsky et al. Nature Ecology & Evolution
- Distinguishing Among Modes of Convergent Adaptation Using Population Genomic Data
- (2017) Kristin M. Lee et al. GENETICS
- Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas
- (2017) Yibo Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Distinguishing Among Modes of Convergent Adaptation Using Population Genomic Data
- (2017) Kristin M. Lee et al. GENETICS
- Melanization in response to wounding is ancestral in arthropods and conserved in albino cave species
- (2017) Helena Bilandžija et al. Scientific Reports
- Discoal: flexible coalescent simulations with selection
- (2016) Andrew D. Kern et al. BIOINFORMATICS
- The industrial melanism mutation in British peppered moths is a transposable element
- (2016) Arjen E. van’t Hof et al. NATURE
- Evolution by gene loss
- (2016) Ricard Albalat et al. NATURE REVIEWS GENETICS
- Causes of molecular convergence and parallelism in protein evolution
- (2016) Jay F. Storz NATURE REVIEWS GENETICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Evaluating the performance of selection scans to detect selective sweeps in domestic dogs
- (2015) Florencia Schlamp et al. MOLECULAR ECOLOGY
- Is Radon Emission in Caves Causing Deletions in Satellite DNA Sequences of Cave-Dwelling Crickets?
- (2015) Giuliana Allegrucci et al. PLoS One
- The energetic cost of vision and the evolution of eyeless Mexican cavefish
- (2015) D. Moran et al. Science Advances
- The Molecular Basis of Phenotypic Convergence
- (2014) Erica Bree Rosenblum et al. Annual Review of Ecology Evolution and Systematics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- A reference genome for common bean and genome-wide analysis of dual domestications
- (2014) Jeremy Schmutz et al. NATURE GENETICS
- Eyeless Mexican Cavefish Save Energy by Eliminating the Circadian Rhythm in Metabolism
- (2014) Damian Moran et al. PLoS One
- The cavefish genome reveals candidate genes for eye loss
- (2014) Suzanne E. McGaugh et al. Nature Communications
- Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations
- (2013) M. I. Fariello et al. GENETICS
- The genetic causes of convergent evolution
- (2013) David L. Stern NATURE REVIEWS GENETICS
- Quantitative Genetic Analysis of Retinal Degeneration in the Blind Cavefish Astyanax mexicanus
- (2013) Kelly E. O'Quin et al. PLoS One
- A Potential Benefit of Albinism in Astyanax Cavefish: Downregulation of the oca2 Gene Increases Tyrosine and Catecholamine Levels as an Alternative to Melanin Synthesis
- (2013) Helena Bilandžija et al. PLoS One
- Circadian rhythms in Mexican blind cavefish Astyanax mexicanus in the lab and in the field
- (2013) Andrew Beale et al. Nature Communications
- Evolution of an adaptive behavior and its sensory receptors promotes eye regression in blind cavefish
- (2012) Masato Yoshizawa et al. BMC BIOLOGY
- Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus)
- (2012) Martina Bradic et al. BMC EVOLUTIONARY BIOLOGY
- The complex origin of Astyanax cavefish
- (2012) Joshua B Gross BMC EVOLUTIONARY BIOLOGY
- Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes
- (2012) C. R. Feldman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The probability of genetic parallelism and convergence in natural populations
- (2012) G. L. Conte et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- Evolution and development in cave animals: from fish to crustaceans
- (2012) Meredith Protas et al. Wiley Interdisciplinary Reviews-Developmental Biology
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- CONVERGENCE, ADAPTATION, AND CONSTRAINT
- (2011) Jonathan B. Losos EVOLUTION
- Drawn to the dark side: A molecular phylogeny of freshwater shrimps (Crustacea: Decapoda: Caridea: Atyidae) reveals frequent cave invasions and challenges current taxonomic hypotheses
- (2011) Kristina von Rintelen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Parallel speciation in Astyanax cave fish (Teleostei) in Northern Mexico
- (2011) Ulrike Strecker et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Stress-induced recombination and the mechanism of evolvability
- (2010) Weihao Zhong et al. BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY
- Emerging model systems in evo-devo: cavefish and microevolution of development
- (2010) William R. Jeffery EVOLUTION & DEVELOPMENT
- Regressive Evolution inAstyanaxCavefish
- (2009) William R. Jeffery Annual Review of Genetics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- The causes of repeated genetic evolution
- (2009) Nicolas Gompel et al. DEVELOPMENTAL BIOLOGY
- Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution
- (2009) Yoshiyuki Yamamoto et al. DEVELOPMENTAL BIOLOGY
- Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
- (2009) Prateek Kumar et al. Nature Protocols
- Is Genetic Evolution Predictable?
- (2009) D. L. Stern et al. SCIENCE
- Relaxed selection in the wild
- (2009) David C. Lahti et al. TRENDS IN ECOLOGY & EVOLUTION
- Evolutionary history of the fish genus Astyanax Baird & Girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies
- (2008) Claudia Ornelas-García et al. BMC EVOLUTIONARY BIOLOGY
- The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species
- (2008) Sangyun Jeong et al. CELL
- Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?
- (2007) J ARENDT et al. TRENDS IN ECOLOGY & EVOLUTION
- Adaptation from standing genetic variation
- (2007) R BARRETT et al. TRENDS IN ECOLOGY & EVOLUTION
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search