Plasmid classifications

Evolution of plasmid mobility: origin and fate of conjugative and non-conjugative plasmids

(2022) Charles Coluzzi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM

(2022) Mislav Acman et al.   Nature Communications

The burden of bacterial antimicrobial resistance in the WHO European region in 2019: a cross-country systematic analysis

(2022) Tomislav Mestrovic et al.   Lancet Public Health

Comprehensive Genome and Plasmidome Analysis of Antimicrobial Resistant Bacteria in Wastewater Treatment Plant Effluent of Tokyo

(2022) Tsuyoshi Sekizuka et al.   Antibiotics-Basel

Genomic network analysis of environmental and livestock F-type plasmid populations

(2021) William Matlock et al.   ISME Journal

COPLA, a taxonomic classifier of plasmids

(2021) Santiago Redondo-Salvo et al.   BMC BIOINFORMATICS

Multispecies Outbreak of Verona Integron-Encoded Metallo-ß-Lactamase-Producing Multidrugresistant Bacteria Driven by a Promiscuous Incompatibility Group A/C2

(2020) Tom J B de Man et al.   CLINICAL INFECTIOUS DISEASES

Large-scale network analysis captures biological features of bacterial plasmids

(2020) Mislav Acman et al.   Nature Communications

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids

(2020) Pierre-Emmanuel Douarre et al.   Frontiers in Microbiology

Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids

(2020) Santiago Redondo-Salvo et al.   Nature Communications

Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance

(2020) James Robertson et al.   Microbial Genomics

Mosaic plasmids are abundant and unevenly distributed across prokaryotic taxa

(2019) Mitchell W. Pesesky et al.   PLASMID

Interactions between plasmids and other mobile genetic elements affect their transmission and persistence

(2019) Francisco Dionisio et al.   PLASMID

Networks Consolidate the Core Concepts of Evolution by Natural Selection

(2019) François Papale et al.   TRENDS IN MICROBIOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Antimicrobial resistance plasmid reservoir in food and food-producing animals

(2018) Jean-Yves Madec et al.   PLASMID

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

(2018) Tiago F Jesus et al.   NUCLEIC ACIDS RESEARCH

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

Multiple plasmid interference – Pledging allegiance to my enemy's enemy

(2017) João Alves Gama et al.   PLASMID

Conjugation efficiency depends on intra and intercellular interactions between distinct plasmids: Plasmids promote the immigration of other plasmids but repress co-colonizing plasmids

(2017) João Alves Gama et al.   PLASMID

Co-resident plasmids travel together

(2017) João Alves Gama et al.   PLASMID

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

(2017) Alex Orlek et al.   PLASMID

The FinO family of bacterial RNA chaperones

(2015) J.N. Mark Glover et al.   PLASMID

fastcluster: Fast Hierarchical, Agglomerative Clustering Routines forRandPython

(2015) Daniel Müllner   Journal of Statistical Software

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems

(2014) Sophie S. Abby et al.   PLoS One

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

(2014) S. Conlan et al.   Science Translational Medicine

Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages

(2014) Mark de Been et al.   PLoS Genetics

A Degenerate Primer MOB Typing (DPMT) Method to Classify Gamma-Proteobacterial Plasmids in Clinical and Environmental Settings

(2012) Andrés Alvarado et al.   PLoS One

The mosaicism of plasmids revealed by atypical genes detection and analysis

(2011) Emanuele Bosi et al.   BMC GENOMICS

Plasmids in Gram negatives: Molecular typing of resistance plasmids

(2011) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks

(2011) M. Tamminen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Finding Statistically Significant Communities in Networks

(2011) Andrea Lancichinetti et al.   PLoS One

The Repertoire of ICE in Prokaryotes Underscores the Unity, Diversity, and Ubiquity of Conjugation

(2011) Julien Guglielmini et al.   PLoS Genetics

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks

(2010) Marco Fondi et al.   ENVIRONMENTAL MICROBIOLOGY

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

(2010) Laura Villa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Mobility of Plasmids

(2010) C. Smillie et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Network analyses structure genetic diversity in independent genetic worlds

(2009) S. Halary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

(2008) Matteo Brilli et al.   BMC BIOINFORMATICS

Why is entry exclusion an essential feature of conjugative plasmids?

(2008) M. Pilar Garcillán-Barcia et al.   PLASMID