Large-scale network analysis captures biological features of bacterial plasmids
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Large-scale network analysis captures biological features of bacterial plasmids
Authors
Keywords
-
Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-05-15
DOI
10.1038/s41467-020-16282-w
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Compatibility and entry exclusion of IncA and IncC plasmids revisited: IncA and IncC plasmids are compatible
- (2018) Stephanie J. Ambrose et al. PLASMID
- Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data
- (2018) Tiago F Jesus et al. NUCLEIC ACIDS RESEARCH
- The Gene Ontology Resource: 20 years and still GOing strong
- (2018) NUCLEIC ACIDS RESEARCH
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank
- (2018) Guillaume Bernard et al. mSystems
- Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids
- (2017) Alex Orlek et al. PLASMID
- Proteobacteria: A Common Factor in Human Diseases
- (2017) G. Rizzatti et al. Biomed Research International
- Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
- (2017) Alex Orlek et al. Frontiers in Microbiology
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Community detection in networks: A user guide
- (2016) Santo Fortunato et al. PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS
- Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
- (2016) Eduardo Corel et al. TRENDS IN MICROBIOLOGY
- Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer
- (2016) Christian J. H. von Wintersdorff et al. Frontiers in Microbiology
- Characterization of Tn3000, a Transposon Responsible forblaNDM-1Dissemination among Enterobacteriaceae in Brazil, Nepal, Morocco, and India
- (2015) Juliana Coutinho Campos et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
- (2015) Masaki Shintani et al. Frontiers in Microbiology
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Community detection in networks: Structural communities versus ground truth
- (2014) Darko Hric et al. PHYSICAL REVIEW E
- Novel Plasmid and Its Variant Harboring both ablaNDM-1Gene and Type IV Secretion System in Clinical Isolates of Acinetobacter lwoffii
- (2012) Hongyan Hu et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Expansion of a Plasmid Classification System for Gram-Positive Bacteria and Determination of the Diversity of Plasmids in Staphylococcus aureus Strains of Human, Animal, and Food Origins
- (2012) Carmen Lozano et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A comprehensive protein-centric ID mapping service for molecular data integration
- (2011) H. Huang et al. BIOINFORMATICS
- Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks
- (2011) M. Tamminen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Finding Statistically Significant Communities in Networks
- (2011) Andrea Lancichinetti et al. PLoS One
- Mobility of Plasmids
- (2010) C. Smillie et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Prokaryotic evolution and the tree of life are two different things
- (2009) Eric Bapteste et al. Biology Direct
- Alignment-Free Sequence Comparison (I): Statistics and Power
- (2009) Gesine Reinert et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- A classification system for plasmids from enterococci and other Gram-positive bacteria
- (2009) L.B. Jensen et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Network analyses structure genetic diversity in independent genetic worlds
- (2009) S. Halary et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network
- (2008) Matteo Brilli et al. BMC BIOINFORMATICS
- HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
- (2008) T. Lima et al. NUCLEIC ACIDS RESEARCH
- Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
- (2008) T. Dagan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started