Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance

Replicon-Based Typing of IncI-Complex Plasmids, and Comparative Genomics Analysis of IncIγ/K1 Plasmids

(2019) Defu Zhang et al.   Frontiers in Microbiology

Mosaic plasmids are abundant and unevenly distributed across prokaryotic taxa

(2019) Mitchell W. Pesesky et al.   PLASMID

Ultrafast search of all deposited bacterial and viral genomic data

(2019) Phelim Bradley et al.   NATURE BIOTECHNOLOGY

Development of a multi-locus typing scheme for an Enterobacteriaceae linear plasmid that mediates inter-species transfer of flagella

(2019) James Robertson et al.   PLoS One

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

Antibiotic resistance: a rundown of a global crisis

(2018) Bilal Aslam et al.   Infection and Drug Resistance

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

(2017) Alex Orlek et al.   PLASMID

Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

(2017) Alex Orlek et al.   Frontiers in Microbiology

Identification of IncA/C Plasmid Replication and Maintenance Genes and Development of a Plasmid Multi-Locus Sequence-Typing Scheme

(2016) Steven J. Hancock et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

(2016) Anna E. Sheppard et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IncHI2 Plasmids Are Predominant in Antibiotic-Resistant Salmonella Isolates

(2016) Wenyao Chen et al.   Frontiers in Microbiology

Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage

(2015) Sophie Octavia et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy

(2015) Masaki Shintani et al.   Frontiers in Microbiology

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

(2014) Uli Klümper et al.   ISME Journal

Broad host range plasmids

(2013) Aayushi Jain et al.   FEMS MICROBIOLOGY LETTERS

Host range diversification within the IncP-1 plasmid group

(2013) H. Yano et al.   MICROBIOLOGY-SGM

A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs

(2013) Wei Chen et al.   PLoS One

Broad-host-range IncP-1 plasmids and their resistance potential

(2013) Magdalena Popowska et al.   Frontiers in Microbiology

A Degenerate Primer MOB Typing (DPMT) Method to Classify Gamma-Proteobacterial Plasmids in Clinical and Environmental Settings

(2012) Andrés Alvarado et al.   PLoS One

Multilocus sequence typing of IncN plasmids

(2011) Aurora García-Fernández et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Predicting Plasmid Promiscuity Based on Genomic Signature

(2010) H. Suzuki et al.   JOURNAL OF BACTERIOLOGY