Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts
Authors
Keywords
-
Journal
MOLECULAR BIOLOGY AND EVOLUTION
Volume 40, Issue 6, Pages -
Publisher
Oxford University Press (OUP)
Online
2023-05-08
DOI
10.1093/molbev/msad111
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution
- (2022) Rhondene Wint et al. MOLECULAR BIOLOGY AND EVOLUTION
- A glimpse at an early stage of microbe domestication revealed in the variable genome of Torulaspora delbrueckii , an emergent industrial yeast
- (2022) Margarida Silva et al. MOLECULAR ECOLOGY
- Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
- (2021) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Signatures of optimal codon usage in metabolic genes inform budding yeast ecology
- (2021) Abigail Leavitt LaBella et al. PLOS BIOLOGY
- Crabtree/Warburg-like aerobic xylose fermentation by engineered Saccharomyces cerevisiae
- (2021) Sae-Byuk Lee et al. METABOLIC ENGINEERING
- Metabolic Specialization and Codon Preference of Lignocellulolytic Genes in the White Rot Basidiomycete Ceriporiopsis subvermispora
- (2020) Alex Gonzalez et al. Genes
- Pentose metabolism and conversion to biofuels and high-value chemicals in yeasts
- (2020) Justyna Ruchala et al. FEMS MICROBIOLOGY REVIEWS
- Engineering xylose metabolism in yeasts to produce biofuels and chemicals
- (2020) Jae Won Lee et al. CURRENT OPINION IN BIOTECHNOLOGY
- Positive selection evidence in xylose-related genes suggests methylglyoxal reductase as a target for the improvement of yeasts’ fermentation in industry
- (2019) Guilherme Borelli et al. Genome Biology and Evolution
- Exploring the xylose paradox in Saccharomyces cerevisiae through in vivo sugar signalomics of targeted deletants
- (2019) Karen O. Osiro et al. Microbial Cell Factories
- Variation and selection on codon usage bias across an entire subphylum
- (2019) Abigail L. Labella et al. PLoS Genetics
- A New Pathway for Mannitol Metabolism in Yeasts Suggests a Link to the Evolution of Alcoholic Fermentation
- (2019) Carla Gonçalves et al. Frontiers in Microbiology
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Factors driving metabolic diversity in the budding yeast subphylum
- (2018) Dana A. Opulente et al. BMC BIOLOGY
- Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum
- (2018) Xing-Xing Shen et al. CELL
- Purification and characterization of xylitol dehydrogenase with l-arabitol dehydrogenase activity from the newly isolated pentose-fermenting yeast Meyerozyma caribbica 5XY2
- (2017) Wiphat Sukpipat et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Exploring xylose metabolism in Spathaspora species: XYL1.2 from Spathaspora passalidarum as the key for efficient anaerobic xylose fermentation in metabolic engineered Saccharomyces cerevisiae
- (2016) Raquel M. Cadete et al. Biotechnology for Biofuels
- Enabling xylose utilization inYarrowia lipolyticafor lipid production
- (2016) Haibo Li et al. Biotechnology Journal
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
- (2016) Jana Trifinopoulos et al. NUCLEIC ACIDS RESEARCH
- Codon usage is an important determinant of gene expression levels largely through its effects on transcription
- (2016) Zhipeng Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative genomics of biotechnologically important yeasts
- (2016) Robert Riley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enabling xylose utilization inYarrowia lipolyticafor lipid production
- (2016) Haibo Li et al. Biotechnology Journal
- Activating and Elucidating Metabolism of Complex Sugars in Yarrowia lipolytica
- (2015) Seunghyun Ryu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts
- (2015) Souhir Marsit et al. MOLECULAR BIOLOGY AND EVOLUTION
- MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage
- (2015) Jarrod D. Hadfield Journal of Statistical Software
- Effect of oxygenation and temperature on glucose-xylose fermentation in Kluyveromyces marxianus CBS712 strain
- (2014) Lorenzo Signori et al. Microbial Cell Factories
- The gut of Guatemalan passalid beetles: a habitat colonized by cellobiose- and xylose-fermenting yeasts
- (2013) Hector Urbina et al. Fungal Ecology
- Molecular cloning, characterization, and engineering of xylitol dehydrogenase from Debaryomyces hansenii
- (2012) Dipanwita Biswas et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries
- (2012) Kuk-Ki Hong et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- High expression of XYL2 coding for xylitol dehydrogenase is necessary for efficient xylose fermentation by engineered Saccharomyces cerevisiae
- (2012) Soo Rin Kim et al. METABOLIC ENGINEERING
- Diversity and Physiological Characterization of D-Xylose-Fermenting Yeasts Isolated from the Brazilian Amazonian Forest
- (2012) Raquel M. Cadete et al. PLoS One
- Balance of XYL1 and XYL2 expression in different yeast chassis for improved xylose fermentation
- (2012) Jian Zha et al. Frontiers in Microbiology
- Comparative genomics of xylose-fermenting fungi for enhanced biofuel production
- (2011) Dana J. Wohlbach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- phytools: an R package for phylogenetic comparative biology (and other things)
- (2011) Liam J. Revell Methods in Ecology and Evolution
- Cloning and characterization of thermotolerant xylitol dehydrogenases from yeast Pichia angusta
- (2010) Dipanwita Biswas et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
- (2010) Federico Abascal et al. NUCLEIC ACIDS RESEARCH
- Bulk Segregant Analysis by High-Throughput Sequencing Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae
- (2010) Jared W. Wenger et al. PLoS Genetics
- Codon usage is associated with the evolutionary age of genes in metazoan genomes
- (2009) Yosef Prat et al. BMC EVOLUTIONARY BIOLOGY
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Role for Gene Duplication and Natural Variation of Gene Expression in the Evolution of Metabolism
- (2008) Daniel J. Kliebenstein PLoS One
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search