Fusobacterium nucleatum aggravates rheumatoid arthritis through FadA-containing outer membrane vesicles

Tryptophan-derived microbial metabolites activate the aryl hydrocarbon receptor in tumor-associated macrophages to suppress anti-tumor immunity

(2022) Kebria Hezaveh et al.   IMMUNITY

The microbial metabolite trimethylamine N-oxide promotes antitumor immunity in triple-negative breast cancer

(2022) Hai Wang et al.   Cell Metabolism

The gut microbiota prime systemic antiviral immunity via the cGAS-STING-IFN-I axis

(2022) Saskia F. Erttmann et al.   IMMUNITY

Placental colonization by Fusobacterium nucleatum is mediated by binding of the Fap2 lectin to placentally displayed Gal-GalNAc

(2022) Lishay Parhi et al.   Cell Reports

Multi-omics analyses of airway host–microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions

(2022) Zhengzheng Yan et al.   Nature Microbiology

Characterization and Function of Tumor Necrosis Factor alpha and Interleukin‐6‐Induced Osteoclasts in Rheumatoid Arthritis

(2021) Kazuhiro Yokota et al.   Arthritis & Rheumatology

Extracellular Vesicles from Child Gut Microbiota Enter into Bone to Preserve Bone Mass and Strength

(2021) Jiang‐Hua Liu et al.   Advanced Science

The Salmonella effector protein SopD targets Rab8 to positively and negatively modulate the inflammatory response

(2021) Huan Lian et al.   Nature Microbiology

The microbiome and human cancer

(2021) Gregory D. Sepich-Poore et al.   SCIENCE

Fusobacterium nucleatum secretes amyloid‐like FadA to enhance pathogenicity

(2021) Qing Meng et al.   EMBO REPORTS

Cytokine Networks in the Pathogenesis of Rheumatoid Arthritis

(2021) Naoki Kondo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Skeletal muscle regeneration with robotic actuation–mediated clearance of neutrophils

(2021) Bo Ri Seo et al.   Science Translational Medicine

Gut dysbiosis induces the development of pre-eclampsia through bacterial translocation

(2020) Xia Chen et al.   GUT

Microbiota-Derived Metabolites Suppress Arthritis by Amplifying Aryl-Hydrocarbon Receptor Activation in Regulatory B Cells

(2020) Elizabeth C. Rosser et al.   Cell Metabolism

Brain abscess in a patient with psoriatic arthritis treated with adalimumab

(2020) Yu-Pei Lo et al.   MEDICINE

Scavenger receptor-A is a biomarker and effector of rheumatoid arthritis: A large-scale multicenter study

(2020) Fanlei Hu et al.   Nature Communications

Breast cancer colonization by Fusobacterium nucleatum accelerates tumor growth and metastatic progression

(2020) Lishay Parhi et al.   Nature Communications

Dysregulated Lung Commensal Bacteria Drive Interleukin-17B Production to Promote Pulmonary Fibrosis through Their Outer Membrane Vesicles

(2019) Daping Yang et al.   IMMUNITY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Extracellular RNAs in periodontopathogenic outer membrane vesicles promote TNF-α production in human macrophages and cross the blood–brain barrier in mice

(2019) Eun-Chong Han et al.   FASEB JOURNAL

Transition of Macrophages to Fibroblast-Like Cells in Healing Myocardial Infarction

(2019) Nezam Haider et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

Modulation of Inflammatory Arthritis in Mice by Gut Microbiota Through Mucosal Inflammation and Autoantibody Generation

(2018) Widian K. Jubair et al.   Arthritis & Rheumatology

Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response

(2018) Yasuhiro Uchimura et al.   IMMUNITY

Fusobacterium nucleatum — symbiont, opportunist and oncobacterium

(2018) Caitlin A. Brennan et al.   NATURE REVIEWS MICROBIOLOGY

Types and origins of bacterial membrane vesicles

(2018) Masanori Toyofuku et al.   NATURE REVIEWS MICROBIOLOGY

Analysis ofFusobacteriumpersistence and antibiotic response in colorectal cancer

(2017) Susan Bullman et al.   SCIENCE

Bacterial Outer Membrane Vesicles Mediate Cytosolic Localization of LPS and Caspase-11 Activation

(2016) Sivapriya Kailasan Vanaja et al.   CELL

Fap2 Mediates Fusobacterium nucleatum Colorectal Adenocarcinoma Enrichment by Binding to Tumor-Expressed Gal-GalNAc

(2016) Jawad Abed et al.   Cell Host & Microbe

Quantitation of faecal Fusobacterium improves faecal immunochemical test in detecting advanced colorectal neoplasia

(2016) Sunny H Wong et al.   GUT

Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease

(2016) H. Chu et al.   SCIENCE

Invariant NKT cells promote alcohol-induced steatohepatitis through interleukin-1β in mice

(2015) Kele Cui et al.   JOURNAL OF HEPATOLOGY

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

(2015) Xuan Zhang et al.   NATURE MEDICINE

Helicobacter pylori ATCC 43629/NCTC 11639 Outer Membrane Vesicles (OMVs) from Biofilm and Planktonic Phase Associated with Extracellular DNA (eDNA)

(2015) Rossella Grande et al.   Frontiers in Microbiology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Fusobacterium nucleatum Promotes Colorectal Carcinogenesis by Modulating E-Cadherin/β-Catenin Signaling via its FadA Adhesin

(2013) Mara Roxana Rubinstein et al.   Cell Host & Microbe

Vesicle formation as a result of interaction between polymorphonuclear neutrophils and Staphylococcus aureus biofilm

(2013) I. V. Chebotar et al.   JOURNAL OF MEDICAL MICROBIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

The Pathogenesis of Rheumatoid Arthritis

(2011) Iain B. McInnes et al.   NEW ENGLAND JOURNAL OF MEDICINE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS