Auto-Kla: a novel web server to discriminate lysine lactylation sites using automated machine learning

Adapt-Kcr: a novel deep learning framework for accurate prediction of lysine crotonylation sites based on learning embedding features and attention architecture

(2022) Zutan Li et al.   BRIEFINGS IN BIOINFORMATICS

Positive feedback regulation of microglial glucose metabolism by histone H4 lysine 12 lactylation in Alzheimer’s disease

(2022) Rui-Yuan Pan et al.   Cell Metabolism

Cyclic immonium ion of lactyllysine reveals widespread lactylation in the human proteome

(2022) Ning Wan et al.   NATURE METHODS

Identification of lysine-lactylated substrates in gastric cancer cells

(2022) Dawei Yang et al.   iScience

YiaC and CobB regulate lysine lactylation in Escherichia coli

(2022) Hanyang Dong et al.   Nature Communications

Transformer models for text-based emotion detection: a review of BERT-based approaches

(2021) Francisca Adoma Acheampong et al.   ARTIFICIAL INTELLIGENCE REVIEW

Overview of PCTK3/CDK18: A Cyclin-Dependent Kinase Involved in Specific Functions in Post-Mitotic Cells

(2021) Rebeka de Oliveir Pepino et al.   CURRENT MEDICINAL CHEMISTRY

Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV

(2021) Alexey Stukalov et al.   NATURE

DOME: recommendations for supervised machine learning validation in biology

(2021) Ian Walsh et al.   NATURE METHODS

BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models

(2021) Yanhua Qiao et al.   BIOINFORMATICS

Effective gene expression prediction from sequence by integrating long-range interactions

(2021) Žiga Avsec et al.   NATURE METHODS

CPLM 4.0: an updated database with rich annotations for protein lysine modifications

(2021) Weizhi Zhang et al.   NUCLEIC ACIDS RESEARCH

Protein lactylation induced by neural excitation

(2021) Hideo Hagihara et al.   Cell Reports

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments

(2020) Lifan Chen et al.   BIOINFORMATICS

Global crotonylome reveals CDYL-regulated RPA1 crotonylation in homologous recombination–mediated DNA repair

(2020) Huajing Yu et al.   Science Advances

MolTrans: Molecular interaction transformer for drug target interaction prediction

(2020) Kexin Huang et al.   BIOINFORMATICS

Deep-Kcr: accurate detection of lysine crotonylation sites using deep learning method

(2020) Hao Lv et al.   BRIEFINGS IN BIOINFORMATICS

Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea

(2020) Mingming Gao et al.   Frontiers in Microbiology

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

TLR signaling adapter BCAP regulates inflammatory to reparatory macrophage transition by promoting histone lactylation

(2020) Ricardo A. Irizarry-Caro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic regulation of gene expression by histone lactylation

(2019) Di Zhang et al.   NATURE

Histone Lactylation: A New Role for Glucose Metabolism

(2019) Maria V. Liberti et al.   TRENDS IN BIOCHEMICAL SCIENCES

Inhibitors of Serine/Threonine Protein Phosphatases: Biochemical and Structural Studies Provide Insight for Further Development

(2018) Mark R Swingle et al.   CURRENT MEDICINAL CHEMISTRY

Computational Identification of Protein Pupylation Sites by Using Profile-Based Composition of k-Spaced Amino Acid Pairs

(2015) Md. Mehedi Hasan et al.   PLoS One

Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features

(2014) Yuan Li et al.   Scientific Reports

Evolution and functional cross-talk of protein post-translational modifications

(2013) Pedro Beltrao et al.   Molecular Systems Biology

CPLM: a database of protein lysine modifications

(2013) Zexian Liu et al.   NUCLEIC ACIDS RESEARCH

Systematic Functional Prioritization of Protein Posttranslational Modifications

(2012) Pedro Beltrao et al.   CELL

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

LC–MS/MS for protein and peptide quantification in clinical chemistry

(2011) Manfred Rauh   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

In Vivo Evidence for Lactate as a Neuronal Energy Source

(2011) M. T. Wyss et al.   JOURNAL OF NEUROSCIENCE