Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

(2012) Kelly J Vining et al.   BMC GENOMICS

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis

(2012) W. Zhang et al.   PLANT CELL

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids

(2012) H. Shen et al.   PLANT CELL

Genome-Wide Evaluation of Histone Methylation Changes Associated with Leaf Senescence in Arabidopsis

(2012) Judy A. Brusslan et al.   PLoS One

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome

(2012) Y. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

(2012) H. Stroud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overcoming the nucleosome barrier during transcript elongation

(2012) Steven J. Petesch et al.   TRENDS IN GENETICS

The Epigenome and Plant Development

(2011) Guangming He et al.   Annual Review of Plant Biology

Chromatin modifications and remodeling in plant abiotic stress responses

(2011) Ming Luo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Readers of histone modifications

(2011) Miyong Yun et al.   CELL RESEARCH

Chromatin: constructing the big picture

(2011) Bas van Steensel   EMBO JOURNAL

High-resolution mapping of open chromatin in the rice genome

(2011) W. Zhang et al.   GENOME RESEARCH

ArabidopsisFloral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation

(2011) Zhaoliang Zhang et al.   PLANT CELL

The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways

(2011) Yong Ding et al.   PLANT JOURNAL

Histone modification: cause or cog?

(2011) Steven Henikoff et al.   TRENDS IN GENETICS

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technology

(2010) Jiao Wu et al.   BMC PLANT BIOLOGY

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

Regulatory mechanism of histone epigenetic modifications in plants

(2010) Dao-Xiu Zhou   Epigenetics

Narrowing Down the Targets: Towards Successful Genetic Engineering of Drought-Tolerant Crops

(2010) Shujun Yang et al.   Molecular Plant

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Phosphatidylinositol 5-Phosphate Links Dehydration Stress to the Activity of ARABIDOPSIS TRITHORAX-LIKE Factor ATX1

(2010) Ivan Ndamukong et al.   PLoS One

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control

(2009) X.-Y. Huang et al.   GENES & DEVELOPMENT

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Chromatin regulation functions in plant abiotic stress responses

(2009) JONG-MYONG KIM et al.   PLANT CELL AND ENVIRONMENT

A dynamic gene expression atlas covering the entire life cycle of rice

(2009) Lei Wang et al.   PLANT JOURNAL

A Raf-Like MAPKKK Gene DSM1 Mediates Drought Resistance through Reactive Oxygen Species Scavenging in Rice

(2009) J. Ning et al.   PLANT PHYSIOLOGY

ArabidopsisORC1 is a PHD-containing H3K4me3 effector that regulates transcription

(2009) María de la Paz Sanchez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance

(2009) X. Hou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Characterization of OsbZIP23 as a Key Player of the Basic Leucine Zipper Transcription Factor Family for Conferring Abscisic Acid Sensitivity and Salinity and Drought Tolerance in Rice

(2008) Y. Xiang et al.   PLANT PHYSIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY