CRISPR /Cas9‐targeted mutagenesis of TaDCL4 , TaDCL5 and TaRDR6 induces male sterility in common wheat

Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome

(2022) Lin-Feng Li et al.   Molecular Plant

Breeding with Dominant Genic Male-Sterility Genes to Boost Crop Grain Yield in Post-Heterosis Utilization Era

(2021) Xiangyuan Wan et al.   Molecular Plant

Conserved and non‐conserved triggers of 24‐nucleotide reproductive phasiRNAs in eudicots

(2021) Suresh Pokhrel et al.   PLANT JOURNAL

Pre-meiotic 21-nucleotide reproductive phasiRNAs emerged in seed plants and diversified in flowering plants

(2021) Suresh Pokhrel et al.   Nature Communications

Evolution of PHAS loci in the young spike of Allohexaploid wheat

(2020) Rongzhi Zhang et al.   BMC GENOMICS

CRISPR/Cas9 mediated disruption of TaNP1 genes results in complete male sterility in bread wheat

(2020) Jian Li et al.   Journal of Genetics and Genomics

Genome Editing Enables Next-Generation Hybrid Seed Production Technology

(2020) Xiantao Qi et al.   Molecular Plant

Oryza sativa RNA-dependent RNA Polymerase 6 Contributes to Double-strand Break Formation in Meiosis

(2020) Changzhen Liu et al.   PLANT CELL

Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

(2020) Chong Teng et al.   Nature Communications

21-nt phasiRNAs direct target mRNA cleavage in rice male germ cells

(2020) Pengfei Jiang et al.   Nature Communications

CHH DNA methylation increases at 24‐ PHAS loci depend on 24‐nt phased small interfering RNAs in maize meiotic anthers

(2020) Mei Zhang et al.   NEW PHYTOLOGIST

Evolution and diversification of reproductive phased small interfering RNAs in Oryza species

(2020) Peng Tian et al.   NEW PHYTOLOGIST

Reproductive phasiRNAs regulate reprogramming of gene expression and meiotic progression in rice

(2020) Yu-Chan Zhang et al.   Nature Communications

24-nt reproductive phasiRNAs are broadly present in angiosperms

(2019) Rui Xia et al.   Nature Communications

Wheat ms5 male‐sterility is induced by recessive homoeologous A and D genome non‐specific Lipid Transfer Proteins

(2019) Margaret A. Pallotta et al.   PLANT JOURNAL

Highly Efficient and Heritable Targeted Mutagenesis in Wheat via the Agrobacterium tumefaciens-Mediated CRISPR/Cas9 System

(2019) Shujuan Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Concurrent modifications in the three homeologs of Ms45 gene with CRISPR-Cas9 lead to rapid generation of male sterile bread wheat (Triticum aestivum L.)

(2018) Manjit Singh et al.   PLANT MOLECULAR BIOLOGY

Targeted mutagenesis using the Agrobacterium tumefaciens-mediated CRISPR-Cas9 system in common wheat

(2018) Shujuan Zhang et al.   BMC PLANT BIOLOGY

Hi-TOM: a platform for high-throughput tracking of mutations induced by CRISPR/Cas systems

(2018) Qing Liu et al.   Science China-Life Sciences

Exploring the genetics of fertility restoration controlled by Rf1 in common wheat (Triticum aestivum L.) using high-density linkage maps

(2017) Manuel Geyer et al.   MOLECULAR GENETICS AND GENOMICS

Construction of a multicontrol sterility system for a maize male-sterile line and hybrid seed production based on the ZmMs7 gene encoding a PHD-finger transcription factor

(2017) Danfeng Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Poaceae-specificMS1encodes a phospholipid-binding protein for male fertility in bread wheat

(2017) Zheng Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A TRIM insertion in the promoter of Ms2 causes male sterility in wheat

(2017) Chuan Xia et al.   Nature Communications

Wheat Ms2 encodes for an orphan protein that confers male sterility in grass species

(2017) Fei Ni et al.   Nature Communications

Molecular identification of the wheat male fertility gene Ms1 and its prospects for hybrid breeding

(2017) Elise J. Tucker et al.   Nature Communications

MS26/CYP704B is required for anther and pollen wall development in bread wheat (Triticum aestivum L.) and combining mutations in all three homeologs causes male sterility

(2017) Manjit Singh et al.   PLoS One

Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene

(2016) Zhenyi Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

(2016) Yourong Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Development of a novel recessive genetic male sterility system for hybrid seed production in maize and other cross-pollinating crops

(2015) Yongzhong Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic and Biochemical Mechanisms of Pollen Wall Development

(2015) Jianxin Shi et al.   TRENDS IN PLANT SCIENCE

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

ShortStack: Comprehensive annotation and quantification of small RNA genes

(2013) M. J. Axtell   RNA

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols