Genome-wide mapping of fluoroquinolone-stabilized DNA gyrase cleavage sites displays drug specific effects that correlate with bacterial persistence
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Title
Genome-wide mapping of fluoroquinolone-stabilized DNA gyrase cleavage sites displays drug specific effects that correlate with bacterial persistence
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2023-01-12
DOI
10.1093/nar/gkac1223
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Note: Only part of the references are listed.- Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis
- (2022) Christopher JL Murray et al. LANCET
- Fluoroquinolone Persistence in Escherichia coli Requires DNA Repair despite Differing between Starving Populations
- (2022) Annabel S. Lemma et al. Microorganisms
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- (2022) Dorien Wilmaerts et al. Cell Reports
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- (2021) Allison M. Murawski et al. CURRENT BIOLOGY
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- (2020) Sandra J. Aedo et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The Gene Ontology resource: enriching a GOld mine
- (2020) et al. NUCLEIC ACIDS RESEARCH
- Bacterial persistence promotes the evolution of antibiotic resistance by increasing survival and mutation rates
- (2019) Etthel Martha Windels et al. ISME Journal
- Enhanced antibiotic resistance development from fluoroquinolone persisters after a single exposure to antibiotic
- (2019) Theresa C. Barrett et al. Nature Communications
- Definitions and guidelines for research on antibiotic persistence
- (2019) Nathalie Q. Balaban et al. NATURE REVIEWS MICROBIOLOGY
- Single-cell imaging and characterization of Escherichia coli persister cells to ofloxacin in exponential cultures
- (2019) Frédéric Goormaghtigh et al. Science Advances
- Coordinated Regulation of Rsd and RMF for Simultaneous Hibernation of Transcription Apparatus and Translation Machinery in Stationary-Phase Escherichia coli
- (2019) Hideji Yoshida et al. Frontiers in Genetics
- Targeting Antibiotic Tolerance, Pathogen by Pathogen
- (2018) Sylvain Meylan et al. CELL
- Timing of DNA damage responses impacts persistence to fluoroquinolones
- (2018) Wendy W. K. Mok et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of Genes Involved in Bacteriostatic Antibiotic-Induced Persister Formation
- (2018) Peng Cui et al. Frontiers in Microbiology
- Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome
- (2018) Dmitry Sutormin et al. NUCLEIC ACIDS RESEARCH
- Activities of gyrase and topoisomerase IV on positively supercoiled DNA
- (2017) Rachel E. Ashley et al. NUCLEIC ACIDS RESEARCH
- Antibiotic tolerance facilitates the evolution of resistance
- (2017) Irit Levin-Reisman et al. SCIENCE
- Persisters—as elusive as ever
- (2016) Niilo Kaldalu et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- The Use of Systemic and Topical Fluoroquinolones
- (2016) Mary Anne Jackson et al. PEDIATRICS
- Mapping Topoisomerase IV Binding and Activity Sites on the E. coli Genome
- (2016) Hafez El Sayyed et al. PLoS Genetics
- Persister Heterogeneity Arising from a Single Metabolic Stress
- (2015) Stephanie M. Amato et al. CURRENT BIOLOGY
- Genome-wide study of mRNA degradation and transcript elongation in Escherichia coli
- (2015) H. Chen et al. Molecular Systems Biology
- Stationary-Phase Persisters to Ofloxacin Sustain DNA Damage and Require Repair Systems Only during Recovery
- (2015) Katherine G. Völzing et al. mBio
- Inhibition of stationary phase respiration impairs persister formation in E. coli
- (2015) Mehmet A. Orman et al. Nature Communications
- Mechanism of Quinolone Action and Resistance
- (2014) Katie J. Aldred et al. BIOCHEMISTRY
- Fluoroquinolone-Gyrase-DNA Complexes
- (2014) Arkady Mustaev et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Dormancy Is Not Necessary or Sufficient for Bacterial Persistence
- (2013) Mehmet A. Orman et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
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- (2013) B. P. Conlon et al. NATURE
- Direct observation of single stationary-phase bacteria reveals a surprisingly long period of constant protein production activity
- (2013) O. Gefen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transposable Prophage Mu Is Organized as a Stable Chromosomal Domain of E. coli
- (2013) Rudra P. Saha et al. PLoS Genetics
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Heterogeneous bacterial persisters and engineering approaches to eliminate them
- (2011) Kyle R Allison et al. CURRENT OPINION IN MICROBIOLOGY
- Age of Inoculum Strongly Influences Persister Frequency and Can Mask Effects of Mutations Implicated in Altered Persistence
- (2011) H. Luidalepp et al. JOURNAL OF BACTERIOLOGY
- All tangled up: how cells direct, manage and exploit topoisomerase function
- (2011) Seychelle M. Vos et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Antimicrobial tolerance and the significance of persister cells in recalcitrant chronic wound biofilms
- (2011) Steven L. Percival et al. WOUND REPAIR AND REGENERATION
- Persister Cells
- (2010) Kim Lewis Annual Review of Microbiology
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- How antibiotics kill bacteria: from targets to networks
- (2010) Michael A. Kohanski et al. NATURE REVIEWS MICROBIOLOGY
- Ciprofloxacin Causes Persister Formation by Inducing the TisB toxin in Escherichia coli
- (2010) Tobias Dörr et al. PLOS BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- SOS Response Induces Persistence to Fluoroquinolones in Escherichia coli
- (2009) Tobias Dörr et al. PLoS Genetics
- The Efficacy of Topoisomerase II-Targeted Anticancer Agents Reflects the Persistence of Drug-Induced Cleavage Complexes in Cells†
- (2008) Omari J. Bandele et al. BIOCHEMISTRY
- DNAPlotter: circular and linear interactive genome visualization
- (2008) T. Carver et al. BIOINFORMATICS
- Cell division in Escherichia coli cultures monitored at single cell resolution
- (2008) Johanna Roostalu et al. BMC MICROBIOLOGY
- RecBCD Enzyme and the Repair of Double-Stranded DNA Breaks
- (2008) M. S. Dillingham et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
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