A comprehensive molecular phylogeny of the brachyuran crab superfamily Xanthoidea provides novel insights into its systematics and evolutionary history

A new genus and species of xanthoid crab (Decapoda: Brachyura) from offshore hard bank habitats in the Gulf of Mexico

(2020) BRENT P. THOMA et al.   ZOOTAXA

Evolutionary Traits that Enable Scleractinian Corals to Survive Mass Extinction Events

(2020) Gal Dishon et al.   Scientific Reports

Trophic innovations fuel reef fish diversification

(2020) Alexandre C. Siqueira et al.   Nature Communications

Macroevolutionary diversification rates show time dependency

(2019) L. Francisco Henao Diaz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans

(2019) Joanna M. Wolfe et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

Macroevolutionary analyses suggest environmental factors, not venom apparatus, play key role in Terebridae marine snail diversification

(2019) Maria Vittoria Modica et al.   SYSTEMATIC BIOLOGY

Impact of whole-genome duplication events on diversification rates in angiosperms

(2018) Jacob B. Landis et al.   AMERICAN JOURNAL OF BOTANY

Paradorippe granulata – A crab with external fertilization and a novel type of sperm storage organ challenges prevalent ideas on the evolution of reproduction in Eubrachyura (Crustacea: Brachyura: Dorippidae)

(2018) Juliane Vehof et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

BAMM at the court of false equivalency: A response to Meyer and Wiens

(2018) Daniel L. Rabosky   EVOLUTION

Influence of predation by two crabs, Pachygrapsus marmoratus (Fabricius, 1787) and Lophozozymus incisus (H. Milne Edwards, 1834) (Decapoda: Brachyura: Grapsidae, Xanthidae), on intertidal mussels (Mytiloidea) in the Adriatic Sea

(2018) Sanja Puljas et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Phylogenies and Diversification Rates: Variance Cannot Be Ignored

(2018) Daniel L Rabosky   SYSTEMATIC BIOLOGY

Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts

(2017) Andreas L. S. Meyer et al.   EVOLUTION

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Identifying patterns and drivers of coral diversity in the Central Indo-Pacific marine biodiversity hotspot

(2017) Morana Mihaljević et al.   PALEOBIOLOGY

Plant feeding promotes diversification in the Crustacea

(2017) Alistair G. B. Poore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models

(2017) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

Past, future, and present of state-dependent models of diversification

(2016) Brian C. O'Meara et al.   AMERICAN JOURNAL OF BOTANY

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

(2016) Brian R. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How Well Can We Detect Lineage-Specific Diversification-Rate Shifts? A Simulation Study of Sequential AIC Methods

(2016) Michael R. May et al.   SYSTEMATIC BIOLOGY

Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction

(2016) Jeremy M. Beaulieu et al.   SYSTEMATIC BIOLOGY

Phylogeny and evolution of shallow-water squat lobsters (Decapoda, Galatheoidea) from the Indo-Pacific

(2016) Ferran Palero et al.   ZOOLOGICA SCRIPTA

Global cooling as a driver of diversification in a major marine clade

(2016) Katie E. Davis et al.   Nature Communications

An assessment of shallow and mesophotic reef brachyuran crab assemblages on the south shore of O‘ahu, Hawai‘i

(2015) Kaleonani K. C. Hurley et al.   CORAL REEFS

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

(2015) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

A Robust Semi-Parametric Test for Detecting Trait-Dependent Diversification

(2015) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

The effect of habitat on modern shark diversification

(2014) L. Sorenson et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolutionary History of True Crabs (Crustacea: Decapoda: Brachyura) and the Origin of Freshwater Crabs

(2014) Ling Ming Tsang et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Phylogenetic relationships of the ubiquitous coral reef crab subfamily Chlorodiellinae (Decapoda, Brachyura, Xanthidae)

(2014) Robert M. Lasley et al.   ZOOLOGICA SCRIPTA

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

Paralytic shellfish poisoning (PSP) toxin- and/or tetrodotoxin-contaminated crabs and food poisoning by them

(2013) T. Noguchi et al.   Toxin Reviews

Evolutionary relationships among American mud crabs (Crustacea: Decapoda: Brachyura: Xanthoidea) inferred from nuclear and mitochondrial markers, with comments on adult morphology

(2013) Brent P. Thoma et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Significance of the sexual openings and supplementary structures on the phylogeny of brachyuran crabs (Crustacea, Decapoda, Brachyura), with new nomina for higher-ranked podotreme taxa

(2013) DANIÈLE GUINOT et al.   ZOOTAXA

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

EVOLUTIONARY DIVERSIFICATION OF REEF CORALS: A COMPARISON OF THE MOLECULAR AND FOSSIL RECORDS

(2011) Carl Simpson et al.   EVOLUTION

DEEP UNDER THE SEA: UNRAVELING THE EVOLUTIONARY HISTORY OF THE DEEP-SEA SQUAT LOBSTER PARAMUNIDA (DECAPODA, MUNIDIDAE)

(2011) Patricia Cabezas et al.   EVOLUTION

Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots

(2011) P. F. COWMAN et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Xanthidae MacLeay, 1838 (Decapoda: Brachyura: Xanthoidea) systematics: A multi-gene approach with support from adult and zoeal morphology

(2011) Joelle C.Y. Lai et al.   ZOOLOGISCHER ANZEIGER

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Rethinking the Phylogeny of Scleractinian Corals: A Review of Morphological and Molecular Data

(2010) A. F. Budd et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Case studies on decapod crustaceans from the Philippines reveal deep, steep underwater slopes as prime habitats for ‘rare’ species

(2009) Jose Christopher E. Mendoza et al.   BIODIVERSITY AND CONSERVATION

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

DID TECTONIC ACTIVITY STIMULATE OLIGOMIOCENE SPECIATION IN THE INDO-WEST PACIFIC

(2008) Suzanne T. Williams et al.   EVOLUTION