Binding of human ACE2 and RBD of Omicron enhanced by unique interaction patterns among SARS‐CoV ‐2 variants of concern

SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses

(2022) Wanwisa Dejnirattisai et al.   CELL

Receptor binding and complex structures of human ACE2 to spike RBD from omicron and delta SARS-CoV-2

(2022) Pengcheng Han et al.   CELL

Structural and functional characterizations of infectivity and immune evasion of SARS-CoV-2 Omicron

(2022) Zhen Cui et al.   CELL

Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift

(2022) Elisabetta Cameroni et al.   NATURE

Omicron escapes the majority of existing SARS-CoV-2 neutralizing antibodies

(2022) Yunlong Cao et al.   NATURE

SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein–ACE2 complex

(2022) Dhiraj Mannar et al.   SCIENCE

Structures of the Omicron Spike trimer with ACE2 and an anti-Omicron antibody

(2022) Wanchao Yin et al.   SCIENCE

Omicron SARS-CoV-2 Variant Spike Protein Shows an Increased Affinity to the Human ACE2 Receptor: An In Silico Analysis

(2022) Joseph Thomas Ortega et al.   Pathogens

Versatile role of ACE2-based biosensors for detection of SARS-CoV-2 variants and neutralizing antibodies

(2022) Jong-Hwan Lee et al.   BIOSENSORS & BIOELECTRONICS

Binding Interactions between Receptor-Binding Domain of Spike Protein and Human Angiotensin Converting Enzyme-2 in Omicron Variant

(2022) Bahaa Jawad et al.   Journal of Physical Chemistry Letters

Antibody escape of SARS-CoV-2 Omicron BA.4 and BA.5 from vaccine and BA.1 serum

(2022) Aekkachai Tuekprakhon et al.   CELL

BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection

(2022) Yunlong Cao et al.   NATURE

Neutralization of the SARS-CoV-2 Omicron BA.4/5 and BA.2.12.1 Subvariants

(2022) Panke Qu et al.   NEW ENGLAND JOURNAL OF MEDICINE

CHARMM-GUI Supports Hydrogen Mass Repartitioning and Different Protonation States of Phosphates in Lipopolysaccharides

(2021) Ya Gao et al.   Journal of Chemical Information and Modeling

Biomechanical characterization of SARS-CoV-2 spike RBD and human ACE2 protein-protein interaction

(2021) Wenpeng Cao et al.   BIOPHYSICAL JOURNAL

Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera

(2021) Piyada Supasa et al.   CELL

The origins of SARS-CoV-2: A critical review

(2021) Edward C. Holmes et al.   CELL

Effect of SARS-CoV-2 B.1.1.7 mutations on spike protein structure and function

(2021) Tzu-Jing Yang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Effects of common mutations in the SARS-CoV-2 Spike RBD and its ligand the human ACE2 receptor on binding affinity and kinetics

(2021) Michael I Barton et al.   eLife

N501Y mutation of spike protein in SARS-CoV-2 strengthens its binding to receptor ACE2

(2021) Fang Tian et al.   eLife

Mutations on RBD of SARS-CoV-2 Omicron variant result in stronger binding to human ACE2 receptor

(2021) Cecylia S. Lupala et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Differential Interactions between Human ACE2 and Spike RBD of SARS-CoV-2 Variants of Concern

(2021) Seonghan Kim et al.   Journal of Chemical Theory and Computation

Omicron SARS-CoV-2 variant: a new chapter in the COVID-19 pandemic

(2021) Salim S Abdool Karim et al.   LANCET

Mechanisms of SARS-CoV-2 entry into cells

(2021) Cody B. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Plasma Neutralization of the SARS-CoV-2 Omicron Variant

(2021) Fabian Schmidt et al.   NEW ENGLAND JOURNAL OF MEDICINE

Molecular insights into receptor binding of recent emerging SARS-CoV-2 variants

(2021) Pengcheng Han et al.   Nature Communications

Covid-19: Omicron may be more transmissible than other variants and partly resistant to existing vaccines, scientists fear

(2021) Ingrid Torjesen   BMJ-British Medical Journal

Structure and Mutations of SARS-CoV-2 Spike Protein: A Focused Overview

(2021) Rukmankesh Mehra et al.   ACS Infectious Diseases

Structural basis of receptor recognition by SARS-CoV-2

(2020) Jian Shang et al.   NATURE

Developing a Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein Model in a Viral Membrane

(2020) Hyeonuk Woo et al.   JOURNAL OF PHYSICAL CHEMISTRY B

CHARMM36m: an improved force field for folded and intrinsically disordered proteins

(2016) Jing Huang et al.   NATURE METHODS

Crucial steps in the structure determination of a coronavirus spike glycoprotein using cryo-electron microscopy

(2016) Alexandra Walls et al.   PROTEIN SCIENCE

Long-Time-Step Molecular Dynamics through Hydrogen Mass Repartitioning

(2015) Chad W. Hopkins et al.   Journal of Chemical Theory and Computation

CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field

(2015) Jumin Lee et al.   Journal of Chemical Theory and Computation

CHARMM Additive All-Atom Force Field for Aldopentofuranoses, Methyl-aldopentofuranosides, and Fructofuranose

(2009) Elizabeth Hatcher et al.   JOURNAL OF PHYSICAL CHEMISTRY B

CHARMM-GUI: A web-based graphical user interface for CHARMM

(2008) Sunhwan Jo et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY