Functional Endophytes Regulating Plant Secondary Metabolism: Current Status, Prospects and Applications

The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis

(2022) Johanna Wong-Bajracharya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Potential Role of Microbial Biostimulants in the Amelioration of Climate Change-Associated Abiotic Stresses on Crops

(2022) Ayomide Emmanuel Fadiji et al.   Frontiers in Microbiology

Toward the Allelopathy of Peganum sp. and Related Chemical Constituents in Agriculture

(2022) Gabin Thierry M. Bitchagno et al.   Frontiers in Plant Science

Prospecting potential of endophytes for modulation of biosynthesis of therapeutic bioactive secondary metabolites and plant growth promotion of medicinal and aromatic plants

(2022) Devendra Singh et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Surviving and thriving: How plants perceive and respond to temperature stress

(2022) Yanglin Ding et al.   DEVELOPMENTAL CELL

Salinity stress tolerance and omics approaches: revisiting the progress and achievements in major cereal crops

(2022) Pardeep Kumar et al.   HEREDITY

Bacillus altitudinis HNH7 and Bacillus velezensis HNH9 promote plant growth through upregulation of growth‐promoting genes in upland cotton

(2022) Nadeem Hasan et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Endophytic Strain ZS-3 Enhances Salt Tolerance in Arabidopsis thaliana by Regulating Photosynthesis, Osmotic Stress, and Ion Homeostasis and Inducing Systemic Tolerance

(2022) Li-Na Shi et al.   Frontiers in Plant Science

Tobacco Plant Growth-Promoting and Antifungal Activities of Three Endophytic Yeast Strains

(2022) Mariana Petkova et al.   Plants-Basel

Live-seq enables temporal transcriptomic recording of single cells

(2022) Wanze Chen et al.   NATURE

Constitutive activation of a nuclear-localized calcium channel complex in Medicago truncatula

(2022) Haiyue Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Leaf photosynthesis: do endophytes have a say?

(2022) T.S. Suryanarayanan et al.   TRENDS IN PLANT SCIENCE

Enhanced specialized metabolite, trichome density, and biosynthetic gene expression in Stevia rebaudiana (Bertoni) Bertoni plants inoculated with endophytic bacteria Enterobacter hormaechei

(2022) Dumas G. Oviedo-Pereira et al.   PeerJ

A haem-sequestering plant peptide promotes iron uptake in symbiotic bacteria

(2022) Siva Sankari et al.   Nature Microbiology

Microorganisms in Plant Growth and Development: Roles in Abiotic Stress Tolerance and Secondary Metabolites Secretion

(2022) Ntombikhona Koza et al.   Microorganisms

Tomato growth promotion by the fungal endophytes Serendipita indica and Serendipita herbamans is associated with sucrose de-novo synthesis in roots and differential local and systemic effects on carbohydrate metabolisms and gene expression

(2022) Vincenzo De Rocchis et al.   JOURNAL OF PLANT PHYSIOLOGY

Dendrobine biosynthesis in Dendrobium nobile in four different habitats is affected by the variations in the endophytic fungal community

(2022) Lin Li et al.   Frontiers in Microbiology

Flagellin C decreases the expression of the Gossypium hirsutum cation/proton exchanger 3 gene to promote calcium ion, hydrogen peroxide, and nitric oxide and synergistically regulate the resistance of cotton to Verticillium wilt

(2022) Heng Zhou et al.   Frontiers in Plant Science

Biological Activities of Some New Secondary Metabolites Isolated from Endophytic Fungi: A Review Study

(2021) Ruihong Zheng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly

(2021) Pingzhi Zhao et al.   PLoS Pathogens

Endosphere Microbiome and Metabolic Differences Between the Spots and Green Parts of Tricyrtis macropoda Leaves

(2021) Yan Wang et al.   Frontiers in Microbiology

Alterations of DNA damage response pathway: Biomarker and therapeutic strategy for cancer immunotherapy

(2021) Minlin Jiang et al.   Acta Pharmaceutica Sinica B

Microbial volatile organic compounds in intra-kingdom and inter-kingdom interactions

(2021) Laure Weisskopf et al.   NATURE REVIEWS MICROBIOLOGY

Plant evolution driven by interactions with symbiotic and pathogenic microbes

(2021) Pierre-Marc Delaux et al.   SCIENCE

Automated design of synthetic microbial communities

(2021) Behzad D. Karkaria et al.   Nature Communications

Endophytic Bacteria From the Roots of the Medicinal Plant Alkanna tinctoria Tausch (Boraginaceae): Exploration of Plant Growth Promoting Properties and Potential Role in the Production of Plant Secondary Metabolites

(2021) Angélique Rat et al.   Frontiers in Microbiology

Antenna arrangement and energy-transfer pathways of PSI–LHCI from the moss Physcomitrella patens

(2021) Qiujing Yan et al.   Cell Discovery

Bacterial endophytes: Molecular interactions with their hosts

(2021) Surjit S. Dudeja et al.   JOURNAL OF BASIC MICROBIOLOGY

Discriminating symbiosis and immunity signals by receptor competition in rice

(2021) Chi Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NO Network for Plant–Microbe Communication Underground: A Review

(2021) Anjali Pande et al.   Frontiers in Plant Science

Bacillus circulans GN03 Alters the Microbiota, Promotes Cotton Seedling Growth and Disease Resistance, and Increases the Expression of Phytohormone Synthesis and Disease Resistance-Related Genes

(2021) Lijun Qin et al.   Frontiers in Plant Science

Comparative Study between Exogenously Applied Plant Growth Hormones versus Metabolites of Microbial Endophytes as Plant Growth-Promoting for Phaseolus vulgaris L.

(2021) Mohamed A. Ismail et al.   Cells

Root Endophytism by Pochonia chlamydosporia Affects Defense-Gene Expression in Leaves of Monocot and Dicot Hosts under Multiple Biotic Interactions

(2021) Shimaa R. T. Tolba et al.   Plants-Basel

Production of bioactive plant secondary metabolites through in vitro technologies—status and outlook

(2021) Christoph Wawrosch et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A global metagenomic map of urban microbiomes and antimicrobial resistance

(2021) David Danko et al.   CELL

Integrating plant-to-plant communication and rhizosphere microbial dynamics: ecological and evolutionary implications and a call for experimental rigor

(2021) Mia M. Howard et al.   ISME Journal

The positive effects of inoculation using arbuscular mycorrhizal fungi and/or dark septate endophytes on the purification efficiency of CuO-nanoparticles-polluted wastewater in constructed wetland

(2021) Yihui Ban et al.   JOURNAL OF HAZARDOUS MATERIALS

Seed priming with endophytic Bacillus subtilis strain-specifically improves growth of Phaseolus vulgaris plants under normal and salinity conditions and exerts anti-stress effect through induced lignin deposition in roots and decreased oxidative and osmotic damages

(2021) Oksana Lastochkina et al.   JOURNAL OF PLANT PHYSIOLOGY

Stem endophytes increase root development, photosynthesis, and survival of elm plantlets (Ulmus minor Mill.)

(2021) Clara Martínez-Arias et al.   JOURNAL OF PLANT PHYSIOLOGY

The ACC deaminase‐producing plant growth‐promoting bacteria: Influences of bacterial strains and ACC deaminase activities in plant tolerance to abiotic stress

(2021) Aung Htay Naing et al.   PHYSIOLOGIA PLANTARUM

Lipid exchanges drove the evolution of mutualism during plant terrestrialization

(2021) Mélanie K. Rich et al.   SCIENCE

Plant Endophytic Fungus Extract ZNC Improved Potato Immunity, Yield, and Quality

(2021) Juan Cao et al.   Frontiers in Plant Science

The Influence of the Grapevine Bacterial and Fungal Endophytes on Biomass Accumulation and Stilbene Production by the In Vitro Cultivated Cells of Vitis amurensis Rupr.

(2021) Olga A. Aleynova et al.   Plants-Basel

Genomic Analysis and Secondary Metabolites Production of the Endophytic Bacillus velezensis Bvel1: A Biocontrol Agent against Botrytis cinerea Causing Bunch Rot in Post-Harvest Table Grapes

(2021) Kallimachos Nifakos et al.   Plants-Basel

Structurally Uncommon Secondary Metabolites Derived from Endophytic Fungi

(2021) Humberto Ortega et al.   Journal of Fungi

Horizontal gene transfer and adaptive evolution in bacteria

(2021) Brian J. Arnold et al.   NATURE REVIEWS MICROBIOLOGY

Light-induced mobile factors from shoots regulate rhizobium-triggered soybean root nodulation

(2021) Tao Wang et al.   SCIENCE

Structural Diversity of Photosystem I and Its Light-Harvesting System in Eukaryotic Algae and Plants

(2021) Tianyu Bai et al.   Frontiers in Plant Science

The treasure inside barley seeds: microbial diversity and plant beneficial bacteria

(2021) Nina Bziuk et al.   Environmental Microbiome

The effect of developmental and environmental factors on secondary metabolites in medicinal plants

(2020) Yanqun Li et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Bioinformatics analysis of endophytic bacteria related to berberine in the Chinese medicinal plant Coptis teeta Wall

(2020) Tian-hao Liu et al.   3 Biotech

Functional roles of microbial symbionts in plant cold tolerance

(2020) Ian S. Acuña‐Rodríguez et al.   ECOLOGY LETTERS

Multiplex digital spatial profiling of proteins and RNA in fixed tissue

(2020) Christopher R. Merritt et al.   NATURE BIOTECHNOLOGY

Antarctic root endophytes improve physiological performance and yield in crops under salt stress by enhanced energy production and Na+ sequestration

(2020) Marco A. Molina-Montenegro et al.   Scientific Reports

Enhancing Cadmium Tolerance and Pea Plant Health through Enterobacter sp. MN17 Inoculation Together with Biochar and Gravel Sand

(2020) Muhammad Naveed et al.   Plants-Basel

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Patents on Endophytic Fungi Related to Secondary Metabolites and Biotransformation Applications

(2020) Daniel Torres-Mendoza et al.   Journal of Fungi

Ligand-recognizing motifs in plant LysM receptors are major determinants of specificity

(2020) Zoltan Bozsoki et al.   SCIENCE

Secondary Metabolites of the Rice Blast Fungus Pyricularia oryzae: Biosynthesis and Biological Function

(2020) Takayuki Motoyama   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

An SHR–SCR module specifies legume cortical cell fate to enable nodulation

(2020) Wentao Dong et al.   NATURE

Osmoregulation and its actions during the drought stress in plants

(2020) Munir Ozturk et al.   PHYSIOLOGIA PLANTARUM

Secondary Metabolites Profiling of Acinetobacter baumannii Associated with Chili (Capsicum annuum L.) Leaves and Concentration Dependent Antioxidant and Prooxidant Properties

(2019) Tahmina Monowar et al.   Biomed Research International

Ecology and Evolution of Plant Microbiomes

(2019) Viviane Cordovez et al.   Annual Review of Microbiology

Adaptation of plants to high-calcium content kart regions: possible involvement of symbiotic microorganisms and underlying mechanisms

(2019) F. Li et al.   BRAZILIAN JOURNAL OF BIOLOGY

Systems Biology of Plant-Microbiome Interactions

(2019) Patricia A. Rodriguez et al.   Molecular Plant

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

Comparative Transcriptomics and Proteomics of Atractylodes lancea in Response to Endophytic Fungus Gilmaniella sp. AL12 Reveals Regulation in Plant Metabolism

(2019) Jie Yuan et al.   Frontiers in Microbiology

Analysis of Chuanxiong Rhizoma substrate on production of ligustrazine in endophytic Bacillus Subtilis by ultra performance liquid chromatography‐quadrupole time‐of‐flight mass spectrometry

(2019) Dan Dan Yin et al.   JOURNAL OF SEPARATION SCIENCE

Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing

(2019) Qi Liu et al.   BRIEFINGS IN BIOINFORMATICS

Evaluation of the Antimicrobial Activity of Endophytic Bacterial Populations From Chinese Traditional Medicinal Plant Licorice and Characterization of the Bioactive Secondary Metabolites Produced by Bacillus atrophaeus Against Verticillium dahliae

(2018) Osama A. A. Mohamad et al.   Frontiers in Microbiology

Antiproliferative and Antimicrobial Activities of Secondary Metabolites and Phylogenetic Study of Endophytic Trichoderma Species From Vinca Plants

(2018) Sahar Leylaie et al.   Frontiers in Microbiology

Salicaceae Endophytes Modulate Stomatal Behavior and Increase Water Use Efficiency in Rice

(2018) Hyungmin Rho et al.   Frontiers in Plant Science

Integrated metabolomic and transcriptomic analyses revealed the distribution of saponins in Panax notoginseng

(2018) Guangfei Wei et al.   Acta Pharmaceutica Sinica B

Endophytic Pseudomonas induces metabolic flux changes that enhance medicinal sesquiterpenoid accumulation in Atractylodes lancea

(2018) Jia–Yu Zhou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

New antimicrobial compounds produced by endophytic Penicillium janthinellum isolated from Panax notoginseng as potential inhibitors of FtsZ

(2018) Jun Xie et al.   FITOTERAPIA

Bacillus pumilus alleviates drought stress and increases metabolite accumulation in Glycyrrhiza uralensis Fisch.

(2018) Zhicai Xie et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Genome inside genome: NGS based identification and assembly of endophytic Sphingopyxis granuli and Pseudomonas aeruginosa genomes from rice genomic reads

(2017) Latha Battu et al.   GENOMICS

Specificity in Legume-Rhizobia Symbioses

(2017) Mitchell Andrews et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Antimicrobial activity of saponins produced by two novel endophytic fungi from Panax notoginseng

(2017) Zhaoxia Jin et al.   NATURAL PRODUCT RESEARCH

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plants transfer lipids to sustain colonization by mutualistic mycorrhizal and parasitic fungi

(2017) Yina Jiang et al.   SCIENCE

New and bioactive natural products from an endophyte of Panax notoginseng

(2017) Jun Xie et al.   RSC Advances

Characterization and Metabolic Diversity of Flavonoids in Citrus Species

(2017) Shouchuang Wang et al.   Scientific Reports

Fungal endophyte-induced salidroside and tyrosol biosynthesis combined with signal cross-talk and the mechanism of enzyme gene expression in Rhodiola crenulata

(2017) Jin-Long Cui et al.   Scientific Reports

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Introducing extra NADPH consumption ability significantly increases the photosynthetic efficiency and biomass production of cyanobacteria

(2016) Jie Zhou et al.   METABOLIC ENGINEERING

Endophytes: A Treasure House of Bioactive Compounds of Medicinal Importance

(2016) Sushanto Gouda et al.   Frontiers in Microbiology

A Friendly Relationship between Endophytic Fungi and Medicinal Plants: A Systematic Review

(2016) Min Jia et al.   Frontiers in Microbiology

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology

(2015) James I. Prosser   NATURE REVIEWS MICROBIOLOGY

An endophytic bacterium isolated from Panax ginseng C.A. Meyer enhances growth, reduces morbidity, and stimulates ginsenoside biosynthesis

(2015) Yugang Gao et al.   Phytochemistry Letters

Deciphering priming-induced improvement of rapeseed (Brassica napus L.) germination through an integrated transcriptomic and proteomic approach

(2015) Szymon Kubala et al.   PLANT SCIENCE

Determination of ginsenosides by Bacillus polymyxa conversion and evaluation on pharmacological activities of the conversion products

(2015) Qing Ji et al.   PROCESS BIOCHEMISTRY

Synthetic microbial communities

(2014) Tobias Großkopf et al.   CURRENT OPINION IN MICROBIOLOGY

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria

(2014) Joseph Nesme et al.   ENVIRONMENTAL MICROBIOLOGY

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen

(2012) Xin Dai et al.   PLoS One

Widespread impact of horizontal gene transfer on plant colonization of land

(2012) Jipei Yue et al.   Nature Communications

Bioactive secondary metabolites from endophytes and associated marine derived fungi

(2011) Abdessamad Debbab et al.   FUNGAL DIVERSITY

An Endophytic Phomopsis sp. Possessing Bioactivity and Fuel Potential with its Volatile Organic Compounds

(2011) Sanjay K. Singh et al.   MICROBIAL ECOLOGY

Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice

(2011) J. J. Faith et al.   SCIENCE

An endophytic fungus from Azadirachta indica A. Juss. that produces azadirachtin

(2011) Souvik Kusari et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

An endophytic bacterium isolated from roots of the halophyte Prosopis strombulifera produces ABA, IAA, gibberellins A1 and A3 and jasmonic acid in chemically-defined culture medium

(2010) Patricia Piccoli et al.   PLANT GROWTH REGULATION

Digital Gene Expression Signatures for Maize Development

(2010) A. L. Eveland et al.   PLANT PHYSIOLOGY

Environments that Induce Synthetic Microbial Ecosystems

(2010) Niels Klitgord et al.   PLoS Computational Biology

Plant-microbe-soil interactions in the rhizosphere: an evolutionary perspective

(2009) Hans Lambers et al.   PLANT AND SOIL

Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis

(2008) Xingchun Wang et al.   CELL RESEARCH

A synthetic Escherichia coli predator–prey ecosystem

(2008) Frederick K Balagaddé et al.   Molecular Systems Biology

The complete genome of an individual by massively parallel DNA sequencing

(2008) David A. Wheeler et al.   NATURE

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Defined spatial structure stabilizes a synthetic multispecies bacterial community

(2008) H. J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA