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Title
Automated design of synthetic microbial communities
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-28
DOI
10.1038/s41467-020-20756-2
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Note: Only part of the references are listed.- SciPy 1.0: fundamental algorithms for scientific computing in Python
- (2020) Pauli Virtanen et al. NATURE METHODS
- Development of a Quorum-Sensing Based Circuit for Control of Coculture Population Composition in a Naringenin Production System
- (2020) Christina V. Dinh et al. ACS Synthetic Biology
- Deep reinforcement learning for the control of microbial co-cultures in bioreactors
- (2020) Neythen J. Treloar et al. PLoS Computational Biology
- De novo resveratrol production through modular engineering of an Escherichia coli–Saccharomyces cerevisiae co-culture
- (2020) Shuo-Fu Yuan et al. Microbial Cell Factories
- Array programming with NumPy
- (2020) Charles R. Harris et al. NATURE
- An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs
- (2019) Jing Wui Yeoh et al. ACS Synthetic Biology
- Rock-paper-scissors: Engineered population dynamics increase genetic stability
- (2019) Michael J. Liao et al. SCIENCE
- Synthetic, Context-Dependent Microbial Consortium of Predator and Prey
- (2019) Feng Liu et al. ACS Synthetic Biology
- Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations
- (2019) Hilje M. Doekes et al. PLoS Computational Biology
- Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem
- (2019) Alexander May et al. PeerJ
- Microbial Interaction Network Inference in Microfluidic Droplets
- (2019) Ryan H. Hsu et al. Cell Systems
- Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium
- (2019) Marika Ziesack et al. mSystems
- Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition
- (2019) Kristina Stephens et al. Nature Communications
- Digitalizing heterologous gene expression in Gram‐negative bacteria with a portable ON/OFF module
- (2019) Belén Calles et al. Molecular Systems Biology
- Designing microbial consortia with defined social interactions
- (2018) Wentao Kong et al. Nature Chemical Biology
- Tools for engineering coordinated system behaviour in synthetic microbial consortia
- (2018) Nicolas Kylilis et al. Nature Communications
- Function and functional redundancy in microbial systems
- (2018) Stilianos Louca et al. Nature Ecology & Evolution
- Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit
- (2017) Apoorv Gupta et al. NATURE BIOTECHNOLOGY
- A stabilized microbial ecosystem of self-limiting bacteria using synthetic quorum-regulated lysis
- (2017) Spencer R. Scott et al. Nature Microbiology
- Self-regulation and the stability of large ecological networks
- (2017) György Barabás et al. Nature Ecology & Evolution
- Community structure follows simple assembly rules in microbial microcosms
- (2017) Jonathan Friedman et al. Nature Ecology & Evolution
- Diversity, Productivity, and Stability of an Industrial Microbial Ecosystem
- (2016) Doruk Beyter et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A computational method for the investigation of multistable systems and its application to genetic switches
- (2016) Miriam Leon et al. BMC Systems Biology
- Oscillatory dynamics in a bacterial cross-protection mutualism
- (2016) Eugene Anatoly Yurtsev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quorum Sensing Communication Modules for Microbial Consortia
- (2016) Spencer R. Scott et al. ACS Synthetic Biology
- A Statistical Approach Reveals Designs for the Most Robust Stochastic Gene Oscillators
- (2016) Mae L. Woods et al. ACS Synthetic Biology
- Modeling quorum sensing trade-offs between bacterial cell density and system extension from open boundaries
- (2016) Mattia Marenda et al. Scientific Reports
- Isocost Lines Describe the Cellular Economy of Genetic Circuits
- (2015) Andras Gyorgy et al. BIOPHYSICAL JOURNAL
- Distributing a metabolic pathway among a microbial consortium enhances production of natural products
- (2015) Kang Zhou et al. NATURE BIOTECHNOLOGY
- Mechanistic links between cellular trade-offs, gene expression, and growth
- (2015) Andrea Y. Weiße et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic dependencies drive species co-occurrence in diverse microbial communities
- (2015) Aleksej Zelezniak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Emergent genetic oscillations in a synthetic microbial consortium
- (2015) Y. Chen et al. SCIENCE
- Correlation between interaction strengths drives stability in large ecological networks
- (2014) Si Tang et al. ECOLOGY LETTERS
- Analysis of Changes in Diversity and Abundance of the Microbial Community in a Cystic Fibrosis Patient over a Multiyear Period
- (2014) Joshua R. Stokell et al. JOURNAL OF CLINICAL MICROBIOLOGY
- A load driver device for engineering modularity in biological networks
- (2014) Deepak Mishra et al. NATURE BIOTECHNOLOGY
- Adaptive Evolution of Synthetic Cooperating Communities Improves Growth Performance
- (2014) Xiaolin Zhang et al. PLoS One
- Model selection in systems and synthetic biology
- (2013) Paul Kirk et al. CURRENT OPINION IN BIOTECHNOLOGY
- Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
- (2013) Samay Pande et al. ISME Journal
- Human Gut Microbiome and Risk for Colorectal Cancer
- (2013) Jiyoung Ahn et al. JNCI-Journal of the National Cancer Institute
- A Comparative Analysis of Industrial Escherichia coli K–12 and B Strains in High-Glucose Batch Cultivations on Process-, Transcriptome- and Proteome Level
- (2013) Karoline Marisch et al. PLoS One
- Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species
- (2012) Kevin R. Foster et al. CURRENT BIOLOGY
- Altruistic cell death and collective drug resistance
- (2012) Carlos Carmona-Fontaine et al. Molecular Systems Biology
- Programming stress-induced altruistic death in engineered bacteria
- (2012) Yu Tanouchi et al. Molecular Systems Biology
- A Programmable Escherichia coli Consortium via Tunable Symbiosis
- (2012) Alissa Kerner et al. PLoS One
- AutoBioCAD: Full Biodesign Automation of Genetic Circuits
- (2012) Guillermo Rodrigo et al. ACS Synthetic Biology
- An End-to-End Workflow for Engineering of Biological Networks from High-Level Specifications
- (2012) Jacob Beal et al. ACS Synthetic Biology
- Computational design approaches and tools for synthetic biology
- (2011) James T. MacDonald et al. Integrative Biology
- Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity
- (2011) Hans C. Bernstein et al. JOURNAL OF BIOTECHNOLOGY
- Cooperative Adaptation to Establishment of a Synthetic Bacterial Mutualism
- (2011) Kazufumi Hosoda et al. PLoS One
- Bayesian design of synthetic biological systems
- (2011) C. P. Barnes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Competitive and cooperative metabolic interactions in bacterial communities
- (2011) Shiri Freilich et al. Nature Communications
- Retroactivity Attenuation in Bio-Molecular Systems Based on Timescale Separation
- (2010) Shridhar Jayanthi et al. IEEE TRANSACTIONS ON AUTOMATIC CONTROL
- Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks
- (2010) E. Thebault et al. SCIENCE
- Automated design of synthetic ribosome binding sites to control protein expression
- (2009) Howard M Salis et al. NATURE BIOTECHNOLOGY
- Bacterial competition: surviving and thriving in the microbial jungle
- (2009) Michael E. Hibbing et al. NATURE REVIEWS MICROBIOLOGY
- Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
- (2008) T. Toni et al. Journal of the Royal Society Interface
- A synthetic Escherichia coli predator–prey ecosystem
- (2008) Frederick K Balagaddé et al. Molecular Systems Biology
- Self-destructive cooperation mediated by phenotypic noise
- (2008) Martin Ackermann et al. NATURE
- Engineering microbial consortia: a new frontier in synthetic biology
- (2008) Katie Brenner et al. TRENDS IN BIOTECHNOLOGY
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